All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 145168 of 209 filtered models

  • BiomedParse

    686170548
    Microsoft ResearchNovember 18, 2024foundation_modelmedical_imagingmultimodal+4

    Biomedical imaging foundation model that segments, detects, and recognizes structures across nine modalities from natural language prompts.

    Imaging
    60Openness
  • Earth Species ProjectNovember 11, 2024audio_captioningbioacousticsfoundation_model+5

    Audio-language foundation model for bioacoustics that answers natural-language questions about animal sounds, with zero-shot species classification.

    BiosignalsLanguage model
    61Openness
  • scGenePT

    3113
    Chan Zuckerberg InitiativeOctober 28, 2024foundation_modelgene_expressionmultimodal+4

    Single-cell perturbation prediction model that adds gene-level language embeddings from NCBI, UniProt, and Gene Ontology to scGPT representations.

    Single-cell
    90Openness
  • MAMMAL

    11891K
    IBM ResearchOctober 28, 2024cell_type_annotationdrug_discoveryfoundation_model+7

    Multi-modal, multi-task biological foundation model trained on 2 billion samples spanning proteins, small molecules, and single-cell gene expression.

    ProteinSmall moleculeSingle-cell
    74Openness
  • IBM ResearchOctober 25, 2024drug_discoveryfoundation_modelgraph_neural_network+5

    Molecular foundation model that late-fuses graph, image, and SMILES encoders into one embedding for molecular property and drug target prediction.

    Small molecule
    77Openness
  • MedRegA

    462913
    Hong Kong University of Science and Technology +1 otherOctober 24, 2024histologyimage_classificationinstruction_tuning+8

    Region-aware bilingual medical multimodal LLM that handles image- and region-level vision-language tasks across eight imaging modalities.

    PathologyLanguage model
    65Openness
  • PULSE

    67301.9K
    The Ohio State University +1 otherOctober 21, 2024cardiologyecgecg_interpretation+6

    Multimodal large language model that interprets 12-lead electrocardiogram images, answering open-ended clinical questions and generating ECG reports.

    BiosignalsImaging
    84Openness
  • CELL-Diff

    7
    Chan Zuckerberg InitiativeOctober 18, 2024cell_biologyde_novo_designdiffusion+7

    Diffusion model translating in both directions between protein sequences and fluorescence microscopy images to predict subcellular localization.

    Imaging
    87Openness
  • Google ResearchOctober 17, 2024activity_recognitionfoundation_modelgenerative_modeling+5

    Wearable sensor foundation model pretrained on heart rate, accelerometer, skin temperature and other channels for activity recognition and imputation.

    Biosignals
    7Openness
  • Chai-1

    2K403
    Chai DiscoveryOctober 11, 2024diffusiondrug_discoveryfoundation_model+2

    Biomolecular structure prediction foundation model covering proteins, small molecules, DNA, RNA, and glycans in a single diffusion framework.

    Protein
    49Openness
  • D-BETA

    3613120
    Singapore Management University +1 otherOctober 3, 2024autoencodercontrastive_learningecg_classification+6

    ECG foundation model pretrained on 12-lead waveforms paired with clinical reports, enabling label-efficient and zero-shot cardiac diagnosis.

    BiosignalsLanguage model
    27Openness
  • TUMSyn

    4526
    ShanghaiTech University +2 othersSeptember 25, 2024cnncontrastive_learningfoundation_model+6

    Text-guided MRI synthesis model that generates brain MR sequences and resolutions on demand from routine scans using imaging-metadata prompts.

    Imaging
    28Openness
  • Charité – Universitätsmedizin BerlinSeptember 11, 2024clinical_phenotypingcontrastive_learningcross_modal_retrieval+5

    Multimodal contrastive model aligning clinical EEG with free-text reports, enabling zero-shot EEG classification from natural-language prompts.

    BiosignalsLanguage model
    26Openness
  • MaCo

    1276
    Shanghai AI LaboratorySeptember 2, 2024chest_x_raycontrastive_learningfoundation_model+9

    Chest X-ray foundation model that pairs masked image modeling with image-report contrastive alignment for zero-shot diagnosis and phrase grounding.

    Imaging
    74Openness
  • gLM2

    92498K
    Tatta Bio +4 othersAugust 17, 2024language_modelmetagenomicsmultimodal+3

    Mixed-modality genomic language model encoding protein coding sequences as amino acids and intergenic DNA as nucleotides in native genomic context.

    DNA & GeneProteinLanguage model
    58Openness
  • ECG-Chat

    8248
    China University of Geosciences +2 othersAugust 16, 2024cardiologycontrastive_learningdisease_classification+6

    Multimodal ECG-language model aligning 12-lead waveforms with clinical report text for conversational cardiac diagnosis and report generation.

    BiosignalsLanguage model
    27Openness
  • BiomedGPT

    7084062
    Lehigh University +9 othersAugust 7, 2024foundation_modelhistologyimage_captioning+7

    Open-source, lightweight generalist vision-language foundation model for diverse biomedical imaging and text tasks.

    Language modelImagingPathology
    33Openness
  • LLaVA-Tri

    412944
    UC Santa Cruz +3 othersAugust 6, 2024foundation_modelhistologymultimodal+5

    Medical vision-language model trained on the MedTrinity-25M dataset, answering questions and generating text about radiology and histology images.

    Language modelPathology
    30Openness
  • MADELEINE

    6745
    Mahmood Lab +1 otherAugust 5, 2024contrastive_learninghistologymultimodal+1

    Slide-level pathology foundation model that learns whole-slide embeddings by aligning multiple stains of the same tissue during pretraining.

    Pathology
    42Openness
  • Google ResearchAugust 2, 2024chest_radiographycnncontrastive_learning+9

    Chest X-ray embedding model built on ELIXR, producing image and image-text embeddings for data-efficient and zero-shot radiograph classification.

    Imaging
  • PathChat

    478
    Mahmood Lab +4 othersJuly 10, 2024cancerdiagnosisfoundation_model+7

    Multimodal vision-language copilot for pathology that answers open-ended questions about histology images and reasons about differential diagnoses.

    PathologyLanguage model
    35Openness
  • Shenzhen Research Institute of Big Data +1 otherJune 27, 2024histologyinstruction_tuningmedical_image_understanding+5

    Open medical multimodal LLMs (7B and 34B) for visual question answering over radiology, pathology, and endoscopy images, trained on PubMedVision.

    PathologyLanguage model
    52Openness
  • Isoformer

    9011722
    InstaDeepJune 20, 2024foundation_modelgene_expressionmultimodal+4

    Multimodal model fusing pre-trained DNA, RNA, and protein encoders through cross-attention to predict tissue-specific transcript isoform expression.

    RNADNA & GeneProtein
    26Openness
  • MAIRA-2

    1534.4K
    Microsoft ResearchJune 6, 2024chest_x_rayinstruction_tuningmultimodal+6

    Microsoft Research multimodal LLM for grounded chest X-ray report generation, localizing each described finding with bounding boxes on the image.

    ImagingLanguage model
    35Openness