All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 121144 of 203 filtered models

  • Institute of Science and Technology Austria +1 otherOctober 1, 2025cell_paintingdiffusiongenerative+4

    Diffusion model for multichannel fluorescent cell microscopy, generating morphologically plausible images aligned to OpenPhenom phenotypic embeddings.

    ImagingSingle-cell
    22Openness
  • NeuroRAD-FM

    Stony Brook University +1 otherSeptember 18, 2025cnnfoundation_modelmolecular_subtyping+6

    Neuro-oncology foundation model for brain tumor MRI, using distributionally robust pretraining for molecular subtyping and survival prediction.

    Imaging
    23Openness
  • McGill University +1 otherSeptember 12, 2025brain_mricnncontrastive_learning+7

    Self-supervised foundation model for 3D brain MRI, learning transferable anatomical representations from unlabeled scans for disease classification.

    Imaging
    74Openness
  • EiRA

    2
    Hunan UniversitySeptember 2, 2025binder_designdnagenerative+6

    Protein binder design model post-trained from a multimodal protein language model to bind proteins, peptides, small molecules, and nucleic acids.

    Protein
    13Openness
  • Central South UniversityAugust 11, 2025foundation_modelgene_expression_predictionhistology+6

    Histology vision transformer with 80M parameters that predicts spatial gene expression from H&E tissue images and transfers to tumor detection.

    PathologySpatial omics
    59Openness
  • CLASP

    44
    McGill UniversityAugust 10, 2025contrastive_learningcross_modal_retrievalgraph_neural_network+7

    Tri-modal contrastive model aligning protein structure, sequence, and text in a shared space for zero-shot cross-modal retrieval and classification.

    Protein
    42Openness
  • PoET-2

    2710
    OpenProtein.AIAugust 5, 2025foundation_modellanguage_modelprotein_design+5

    Multimodal, retrieval-augmented protein foundation model that learns family-specific evolutionary constraints with optional structure conditioning.

    Protein
    37Openness
  • PLMDA-PPI

    101
    Huazhong University of Science and TechnologyJuly 4, 2025graph_neural_networkinterface_contact_predictionprotein_protein_interaction+4

    Protein-protein interaction predictor that adds contact-guided dual attention and a geometric encoder to frozen protein language model embeddings.

    Protein
    77Openness
  • AppleJune 30, 2025foundation_modelmambarepresentation_learning+3

    Apple's foundation model trained on behavioral signals from wearables, modeling 27 HealthKit metrics to improve predictions across 57 health tasks.

    Biosignals
    7Openness
  • MELP

    311818
    The University of Hong KongJune 27, 2025contrastive_learningecg_classificationelectrocardiogram+4

    Multi-scale ECG-language model that aligns 12-lead ECG signals with clinical text at token, beat, and rhythm levels for zero-shot cardiac diagnosis.

    BiosignalsLanguage model
    68Openness
  • MOJO

    4045
    InstaDeepJune 25, 2025bertdna_methylationfoundation_model+7

    Bimodal masked language model that jointly encodes bulk RNA-seq expression and DNA methylation into patient-level embeddings for cancer genomics.

    RNADNA & Gene
    29Openness
  • Monash UniversityJune 23, 2025classificationconnectomicsfmri+7

    5.6M-parameter multimodal foundation model fusing fMRI time series with diffusion-MRI structural connectivity in a shared ROI embedding space.

    ImagingBiosignals
    71Openness
  • LucaVirus

    745155
    Sun Yat-sen University +1 otherJune 14, 2025antibody_designfoundation_modelgenomics+8

    Multimodal viral foundation model over nucleotide and protein sequence, built for virus discovery, function annotation, and antibody design.

    DNA & GeneProtein
    88Openness
  • PhysioWave

    18914
    ETH Zurich +2 othersJune 12, 2025arrhythmia_detectionecgeeg+9

    Physiological signal foundation model for ECG, EMG, and EEG pairing learnable multi-scale wavelet decomposition with masked transformer pretraining.

    Biosignals
    80Openness
  • NeuroSTORM

    1164
    Chinese University of Hong Kong +7 othersJune 11, 2025disease_diagnosisfmrifoundation_model+6

    Spatiotemporal foundation model that learns representations directly from 4D functional MRI volumes for disease diagnosis and phenotype prediction.

    ImagingBiosignals
    78Openness
  • IBM ResearchJune 1, 2025cell_type_annotationfoundation_modelgene_expression+6

    Open-source framework for building RNA and DNA foundation models, featuring WCED pretraining for transcriptomics and SNP-aware encoding for genomics.

    DNA & Gene
    84Openness
  • DreaMS

    19471
    IOCB Prague +1 otherMay 23, 2025chemical_property_predictionfoundation_modelmass_spectrometry+7

    Self-supervised transformer pretrained on millions of tandem mass spectra, giving embeddings for spectral annotation and fingerprint prediction.

    MetabolomicsSmall molecule
    98Openness
  • BrainOmni

    7128
    Tsinghua University +3 othersMay 18, 2025brain_signal_classificationeegfoundation_model+7

    Brain foundation model unifying EEG and MEG in a single encoder via a shared discrete tokenizer that transfers across sensor layouts and montages.

    Biosignals
    80Openness
  • HGFM

    37
    Tsinghua University +2 othersApril 1, 2025brain_connectivitydisease_classificationfew_shot+6

    Hypergraph foundation model for brain disease diagnosis from resting-state fMRI, self-supervised on high-order connectivity among brain regions.

    BiosignalsImaging
    10Openness
  • FoldMatch

    11
    RCSB Protein Data Bank +1 otherMarch 6, 2025embeddingsrepresentation_learningstructural_biology+2

    Protein structure embedding model that compresses each 3D fold into a single fixed-length vector for proteome-wide similarity search and clustering.

    Protein
    23Openness
  • Tahoe-100M-SCVI

    1.7K123
    Tahoe TherapeuticsFebruary 20, 2025autoencodercancerembeddings+6

    scVI variational autoencoder trained on the Tahoe-100M drug-perturbation atlas, giving a 10-dimensional embedding of treated cancer cell states.

    Single-cell
    93Openness
  • HeartLang

    5646
    Peking UniversityFebruary 15, 2025arrhythmia_detectionecg_classificationelectrocardiogram+5

    ECG foundation model that treats heartbeats as words and rhythm strips as sentences, using heartbeat-level tokenization for diagnostic classification.

    Biosignals
    78Openness
  • KAIST +1 otherFebruary 7, 2025disease_diagnosisfmrifoundation_model+6

    Functional MRI foundation model that learns brain dynamics as a stochastic optimal control problem, self-supervised on 41,072 UK Biobank subjects.

    Biosignals
    8Openness
  • DOE Joint Genome Institute +6 othersFebruary 5, 2025de_novo_designfoundation_modelgenerative+6

    4B-parameter generative genome foundation model trained on assembled environmental metagenomes for microbial representation and de novo DNA design.

    DNA & Gene
    49Openness