All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 121–144 of 203 filtered models
MorphGen
74—Institute of Science and Technology Austria +1 otherOctober 1, 2025cell_paintingdiffusiongenerative+4Diffusion model for multichannel fluorescent cell microscopy, generating morphologically plausible images aligned to OpenPhenom phenotypic embeddings.
ImagingSingle-cell22OpennessNeuroRAD-FM
———Neuro-oncology foundation model for brain tumor MRI, using distributionally robust pretraining for molecular subtyping and survival prediction.
Imaging23Openness3D-Neuro-SimCLR
913—Self-supervised foundation model for 3D brain MRI, learning transferable anatomical representations from unlabeled scans for disease classification.
Imaging74OpennessEiRA
—2—Protein binder design model post-trained from a multimodal protein language model to bind proteins, peptides, small molecules, and nucleic acids.
Protein13OpennessHistology vision transformer with 80M parameters that predicts spatial gene expression from H&E tissue images and transfers to tumor detection.
PathologySpatial omics59OpennessCLASP
44—Tri-modal contrastive model aligning protein structure, sequence, and text in a shared space for zero-shot cross-modal retrieval and classification.
Protein42OpennessPoET-2
2710—Multimodal, retrieval-augmented protein foundation model that learns family-specific evolutionary constraints with optional structure conditioning.
Protein37OpennessPLMDA-PPI
101—Huazhong University of Science and TechnologyJuly 4, 2025graph_neural_networkinterface_contact_predictionprotein_protein_interaction+4Protein-protein interaction predictor that adds contact-guided dual attention and a geometric encoder to frozen protein language model embeddings.
Protein77OpennessApple's foundation model trained on behavioral signals from wearables, modeling 27 HealthKit metrics to improve predictions across 57 health tasks.
Biosignals7OpennessMELP
311818Multi-scale ECG-language model that aligns 12-lead ECG signals with clinical text at token, beat, and rhythm levels for zero-shot cardiac diagnosis.
BiosignalsLanguage model68Openness5.6M-parameter multimodal foundation model fusing fMRI time series with diffusion-MRI structural connectivity in a shared ROI embedding space.
ImagingBiosignals71OpennessLucaVirus
745155Multimodal viral foundation model over nucleotide and protein sequence, built for virus discovery, function annotation, and antibody design.
DNA & GeneProtein88OpennessPhysioWave
18914—Physiological signal foundation model for ECG, EMG, and EEG pairing learnable multi-scale wavelet decomposition with masked transformer pretraining.
Biosignals80OpennessNeuroSTORM
1164—Spatiotemporal foundation model that learns representations directly from 4D functional MRI volumes for disease diagnosis and phenotype prediction.
ImagingBiosignals78OpennessBioMed Multi-Omic
62—23Open-source framework for building RNA and DNA foundation models, featuring WCED pretraining for transcriptomics and SNP-aware encoding for genomics.
DNA & Gene84OpennessDreaMS
19471—Self-supervised transformer pretrained on millions of tandem mass spectra, giving embeddings for spectral annotation and fingerprint prediction.
MetabolomicsSmall molecule98OpennessBrainOmni
7128—Brain foundation model unifying EEG and MEG in a single encoder via a shared discrete tokenizer that transfers across sensor layouts and montages.
Biosignals80OpennessHGFM
—37—Hypergraph foundation model for brain disease diagnosis from resting-state fMRI, self-supervised on high-order connectivity among brain regions.
BiosignalsImaging10OpennessFoldMatch
11——Protein structure embedding model that compresses each 3D fold into a single fixed-length vector for proteome-wide similarity search and clustering.
Protein23OpennessTahoe-100M-SCVI
1.7K123—scVI variational autoencoder trained on the Tahoe-100M drug-perturbation atlas, giving a 10-dimensional embedding of treated cancer cell states.
Single-cell93OpennessHeartLang
5646—ECG foundation model that treats heartbeats as words and rhythm strips as sentences, using heartbeat-level tokenization for diagnostic classification.
Biosignals78OpennessFunctional MRI foundation model that learns brain dynamics as a stochastic optimal control problem, self-supervised on 41,072 UK Biobank subjects.
Biosignals8OpennessGenomeOcean
150241K4B-parameter generative genome foundation model trained on assembled environmental metagenomes for microbial representation and de novo DNA design.
DNA & Gene49Openness