All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 7396 of 209 filtered models

  • HD-Prot

    74
    The Hong Kong Polytechnic University +2 othersDecember 17, 2025diffusiongenerativeinverse_folding+6

    Multimodal protein language model that adds a continuous-token diffusion head to a discrete pLM, modeling structure without vector quantization.

    Protein
    14Openness
  • M-Optimus

    BioptimusDecember 17, 2025clinical_outcome_predictiondrug_target_identificationfoundation_model+8

    Multimodal foundation model that embeds histology, transcriptomics, and clinical records in one space for patient stratification and target discovery.

    PathologySpatial omicsSingle-cell
    3Openness
  • LG AI ResearchDecember 16, 2025biomarker_predictioncancer_subtypingcontrastive_learning+8

    Pathology foundation model that aligns whole-slide images with genomic, epigenetic, and transcriptomic data for patient-level tumor representations.

    PathologySpatial omics
    14Openness
  • Eva

    4
    Enable Medicine +4 othersDecember 12, 2025cell_type_annotationcross_modal_inferencefoundation_model+8

    Tissue imaging foundation model pretrained on matched H&E histology and spatial proteomics for cross-modal inference and zero-shot retrieval.

    PathologySpatial omics
    4Openness
  • ISTS

    New York UniversityDecember 2, 2025autoencoderbertcancer_classification+9

    Pan-cancer multi-omic foundation model encoding CpG-island DNA methylation and RNA-seq for zero-shot cancer classification and mutation prediction.

    Single-cellDNA & Gene
    20Openness
  • Technion – Israel Institute of Technology +1 otherNovember 26, 2025function_predictiongraph_neural_networkmultimodal+4

    Multimodal protein representation model that iteratively fuses a sequence language model with a 3D structure encoder through a shared learnable token.

    Protein
    68Openness
  • Melody

    Shandong University +2 othersNovember 23, 2025cnndna_methylationepigenomics+5

    Deep learning framework that predicts DNA methylation from genomic sequence across 39 human tissues, with an scRNA-seq variant for unseen cell types.

    DNA & Gene
    8Openness
  • NeuroVFM

    554654
    University of Michigan +1 otherNovember 23, 2025ctfoundation_modeljoint_embedding_predictive_architecture+8

    Generalist neuroimaging vision foundation model pretrained on 5.24M clinical MRI and CT volumes for radiologic diagnosis and report generation.

    Imaging
    57Openness
  • Puget

    University of WashingtonNovember 20, 2025chromatindnafoundation_model+6

    Gene expression prediction model combining DNA sequence with Hi-C contact maps to capture 3D chromatin looping behind cell-type-specific expression.

    DNA & Gene
    8Openness
  • Evo2HiC

    102
    University of WashingtonNovember 19, 2025chromatinchromatin_contact_predictionepigenomic_profiling+9

    Multimodal foundation model that distills Evo 2 into a compact encoder guided by Hi-C data, predicting cell-type-specific 3D genome architecture.

    DNA & GeneSpatial omics
    57Openness
  • SIGMMA

    1
    Helmholtz Munich +1 otherNovember 19, 2025contrastive_learningcross_modal_retrievalgene_expression_prediction+7

    Multi-modal contrastive model that aligns H&E histopathology with spatial transcriptomics across tissue scales to predict gene expression from images.

    PathologySpatial omics
    20Openness
  • Uni-Hema

    1
    Information Technology University of the Punjab +1 otherNovember 18, 2025classificationcnnfoundation_model+8

    Digital hematopathology foundation model unifying blood-cell detection, classification, segmentation, and visual question answering.

    Pathology
    8Openness
  • New York UniversityNovember 10, 2025cnndrug_discoverygraph_neural_network+8

    Multimodal conversational LLM for metabolite analysis, fusing a molecular-graph GNN and molecular-image CNN with a Vicuna-13B language backbone.

    MetabolomicsSmall molecule
    48Openness
  • Nona

    3
    GenentechNovember 6, 2025discrete_diffusionfoundation_modelfunctional_genomics+8

    Genomics foundation model that unifies sequence-to-function prediction, DNA language modeling, and generative regulatory design in one backbone.

    DNA & GeneRNA
    8Openness
  • MolChord

    2
    Beijing Zhongguancun Academy +1 otherOctober 31, 2025de_novo_designdiffusiondrug_discovery+4

    Structure-based drug design model that generates ligands for a protein pocket, pairing a diffusion structure encoder with preference optimization.

    Small moleculeProtein
    23Openness
  • OpenFold3

    7961
    Aqlaboratory +2 othersOctober 28, 2025diffusiondrug_discoveryfoundation_model+2

    Open-source Apache-2.0 reproduction of AlphaFold3 that predicts all-atom structures of proteins, RNA, DNA, small molecules, and their complexes.

    ProteinRNASmall molecule
    92Openness
  • Verily Life SciencesOctober 24, 2025cross_attentiondisease_risk_predictionelectronic_health_records+7

    Multimodal EHR foundation model that fuses polygenic risk scores into a GPT-2-style backbone by cross-attention for zero-shot disease risk prediction.

    Language modelDNA & Gene
    8Openness
  • Tahoe-x1

    1591539
    Tahoe TherapeuticsOctober 23, 2025cancercell_type_annotationdrug_discovery+7

    Perturbation-trained single-cell foundation models (up to 3B parameters) that jointly model genes, cells, and compounds for precision oncology tasks.

    Single-cellSmall molecule
    95Openness
  • MetaboFM

    2
    Georgia Institute of TechnologyOctober 23, 2025classificationfoundation_modelmass_spectrometry_imaging+6

    Vision Transformer foundation model for spatial metabolomics, pretrained on ~4,000 curated METASPACE mass spectrometry imaging datasets.

    MetabolomicsSpatial omicsImaging
    10Openness
  • CellTok

    Tsinghua UniversityOctober 22, 2025autoencodercell_cell_communicationcell_type_annotation+7

    Multimodal LLM that tokenizes single cells into discrete VQ-VAE codebook tokens, letting one model reason jointly over transcriptomes and text.

    Single-cellLanguage model
    20Openness
  • KnowMol

    95
    Institute of Computing Technology, Chinese Academy of SciencesOctober 22, 2025cheminformaticsde_novo_designgraph_neural_network+6

    Multimodal molecular large language model grounding molecule understanding and generation in fine-grained, multi-level chemical knowledge.

    Small moleculeLanguage model
    69Openness
  • CoLiPRI

    155.5K
    Microsoft Research +4 othersOctober 20, 2025contrastive_learningmultimodalradiology+3

    Vision-language encoders for chest CT that align 3D volumes with radiology reports using contrastive, report-generation, and masked-image objectives.

    Imaging
    60Openness
  • Odyssey

    1
    AnthrogenOctober 15, 2025de_novo_designdiffusionfoundation_model+2

    Proprietary family of multimodal protein language models (up to 102B parameters) for sequence and structure generation, editing, and design.

    Protein
    13Openness
  • MIMO

    1227
    Peking University +1 otherOctober 11, 2025histologyinstruction_tuningmultimodal+6

    Medical vision-language model that takes visual prompts on an image and returns answers grounded in pixel-level segmentation masks.

    ImagingLanguage model
    11Openness