All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 7396 of 125 filtered models

  • Evolla

    69239
    Westlake UniversityJanuary 6, 2025foundation_modellanguage_modelmultimodal+2

    Multimodal 80B-parameter protein-language model that answers natural language questions about protein function from sequence and structure.

    Protein
    67Openness
  • ppLM-CO

    University of AlbertaDecember 12, 2024codon_optimizationgenerativelanguage_model+4

    Codon optimization framework that adds a generative head to a frozen ProtBert protein language model to design highly expressed coding sequences.

    RNAProtein
    12Openness
  • BiMediX2

    742120
    Mohamed bin Zayed University of Artificial IntelligenceDecember 10, 2024histologyinstruction_tuninglanguage_model+7

    Bilingual Arabic-English medical multimodal model built on Llama 3.1 for radiology, CT, and histology image understanding and question answering.

    Language modelImagingPathology
    11Openness
  • AIDO.DNA

    1681783
    genbio.aiDecember 1, 2024bertdnafoundation_model+7

    DNA foundation model scaling an encoder-only transformer to 7 billion parameters for variant effect prediction, gene expression, and sequence design.

    DNA & Gene
    27Openness
  • genbio.aiNovember 29, 2024foundation_modellanguage_modelmixture_of_experts+6

    Mixture-of-experts protein language model scaling to 16 billion parameters, applied to variant effect prediction and de novo protein design.

    Protein
    29Openness
  • AIDO.RNA

    168261.1K
    genbio.aiNovember 28, 2024bertfoundation_modellanguage_model+7

    RNA foundation model with 1.6 billion parameters, pretrained on 42 million non-coding RNA sequences for structure prediction and RNA sequence design.

    RNA
    18Openness
  • Harvard Medical School +1 otherNovember 12, 2024chromatingene_expressiongenomics+4

    Conditional autoregressive genomic language model trained on 13.6M mammalian promoters, scoring promoter variants, including indels, zero-shot.

    DNA & Gene
    89Openness
  • p-IgGen

    13297
    Oxford Protein Informatics Group (OPIG) +1 otherNovember 9, 2024antibodyde_novo_designfoundation_model+5

    Antibody language model that generates paired heavy and light variable domains, with a developability-conditioned variant for manufacturable designs.

    Protein
    68Openness
  • RhoFold+

    243216962
    ml4bioNovember 1, 2024foundation_modellanguage_modelstructure_prediction+1

    End-to-end RNA 3D structure prediction from sequence alone, coupling the RNA-FM language model with an Invariant Point Attention structure module.

    RNA
    65Openness
  • SleepGPT

    22
    South China University of Technology +1 otherOctober 28, 2024eeglanguage_modelself_supervised+3

    Language model over whole-night sleep stage sequences that corrects automated sleep staging and supplies features for sleep disorder diagnosis.

    Biosignals
    51Openness
  • MedRegA

    462913
    Hong Kong University of Science and Technology +1 otherOctober 24, 2024histologyimage_classificationinstruction_tuning+8

    Region-aware bilingual medical multimodal LLM that handles image- and region-level vision-language tasks across eight imaging modalities.

    PathologyLanguage model
    65Openness
  • PSALM

    Harvard University +1 otherOctober 17, 2024language_modelproteomicstransfer_learning+1

    Protein domain annotation model pairing an ESM-2 backbone with a probabilistic decoder, bringing language-model sensitivity to Pfam-style assignment.

    Protein
    91Openness
  • Columbia UniversityOctober 11, 2024language_modelprotein_dynamicsrepresentation_learning+4

    Protein language models trained on biophysical dynamics from MD simulations and normal-mode analysis; ESMDance builds on ESM2 for variant effects.

    Protein
    84Openness
  • gLM2

    92498K
    Tatta Bio +4 othersAugust 17, 2024language_modelmetagenomicsmultimodal+3

    Mixed-modality genomic language model encoding protein coding sequences as amino acids and intergenic DNA as nucleotides in native genomic context.

    DNA & GeneProteinLanguage model
    58Openness
  • University of TokyoJuly 25, 2024bertchromatinchromatin_state_modeling+7

    Chromatin-state language model pretrained on ROADMAP annotations from 127 human cell types to find chromatin-state motifs and predict gene expression.

    DNA & Gene
    86Openness
  • Yale UniversityJuly 21, 2024cell_type_annotationfoundation_modellanguage_model

    Framework turning single-cell expression profiles into ranked gene-name sequences, letting off-the-shelf language models generate and annotate cells.

    Single-cell
    74Openness
  • BioMapJune 9, 2024foundation_modellanguage_modelscaling_laws

    Scaling-law study of protein language models identifying compute-optimal training for causal and masked objectives on 939 million protein sequences.

    Protein
    22Openness
  • LOBSTER

    1657
    Prescient Design +1 otherMay 15, 2024fitness_predictionfoundation_modellanguage_model+5

    Efficient protein language model library from Prescient Design enabling high-quality sequence representations and fitness prediction in 24 GPU hours.

    Protein
    69Openness
  • CellPLM

    10497
    OmicsMLMay 1, 2024cell_biologyfoundation_modellanguage_model+1

    Single-cell foundation model that treats cells as tokens and tissues as sentences, encoding cell-cell relationships across 85M parameters.

    Single-cell
    50Openness
  • OpenCRISPR-1

    1.2K80
    ProfluentApril 22, 2024de_novo_designdnafoundation_model+5

    AI-designed CRISPR-Cas9 gene editor generated by protein language models trained on 1.2 million CRISPR operons and shown to edit the human genome.

    Protein
    16Openness
  • M3D

    454172924
    Beijing Academy of Artificial IntelligenceMarch 31, 2024ctimage_text_retrievalinstruction_tuning+9

    Multimodal large language model for 3D medical imaging that handles report generation, visual question answering, and segmentation on CT volumes.

    ImagingLanguage model
    77Openness
  • PLMSearch

    8086
    Fudan UniversityMarch 30, 2024homology_detectionlanguage_modelsequence_search

    Protein language model-based sequence search that detects remote homologs with threefold higher sensitivity than MMseqs2 at comparable speed.

    Protein
    90Openness
  • ERNIE-RNA

    44431.8K
    Tsinghua UniversityMarch 17, 2024foundation_modellanguage_modelsecondary_structure_prediction+1

    RNA language model that builds base-pairing constraints into self-attention, pretrained on 20.4 million sequences for structure and function tasks.

    RNA
    46Openness
  • Caduceus

    2482232.6K
    Kuleshov LabMarch 5, 2024foundation_modelgenomicslanguage_model+2

    Bidirectional, reverse-complement equivariant DNA language models built on Mamba state space models for long-range variant effect prediction.

    DNA & Gene
    86Openness