All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 2548 of 141 filtered models

  • Harvard Medical SchoolDecember 31, 2025cell_biologyfoundation_modelmicroscopy+5

    Native 3D vision transformer self-supervised on unlabeled fluorescence microscopy volumes, segmenting subcellular structures without voxel labels.

    Imaging
    8Openness
  • LG AI ResearchDecember 16, 2025biomarker_predictioncancer_subtypingcontrastive_learning+8

    Pathology foundation model that aligns whole-slide images with genomic, epigenetic, and transcriptomic data for patient-level tumor representations.

    PathologySpatial omics
    14Openness
  • Eva

    4
    Enable Medicine +4 othersDecember 12, 2025cell_type_annotationcross_modal_inferencefoundation_model+8

    Tissue imaging foundation model pretrained on matched H&E histology and spatial proteomics for cross-modal inference and zero-shot retrieval.

    PathologySpatial omics
    4Openness
  • NeuroVFM

    554654
    University of Michigan +1 otherNovember 23, 2025ctfoundation_modeljoint_embedding_predictive_architecture+8

    Generalist neuroimaging vision foundation model pretrained on 5.24M clinical MRI and CT volumes for radiologic diagnosis and report generation.

    Imaging
    57Openness
  • SHEST

    1
    Samsung Advanced Institute for Health Sciences and Technology +2 othersNovember 19, 2025cell_type_annotationgene_expressionhistology+5

    Histopathology model that predicts single-cell type composition and reconstructs spatial gene expression from H&E slides, with no molecular assay.

    PathologySpatial omics
    16Openness
  • Uni-Hema

    1
    Information Technology University of the Punjab +1 otherNovember 18, 2025classificationcnnfoundation_model+8

    Digital hematopathology foundation model unifying blood-cell detection, classification, segmentation, and visual question answering.

    Pathology
    8Openness
  • JWTH

    1
    Technical University of MunichNovember 7, 2025biomarker_detectioncancerfoundation_model+4

    Pathology foundation model that fuses global patch and cell-level tokens via joint-weighted attention pooling for H&E-based biomarker detection.

    Pathology
    5Openness
  • PLUTO-4

    2
    PathAINovember 4, 2025digital_pathologyfoundation_modelhistology+6

    Digital pathology foundation models from PathAI, spanning a 22M-parameter variant and a 1.1B-parameter flagship trained on 551K whole-slide images.

    Pathology
    19Openness
  • GPFM

    12954
    Hong Kong University of Science and Technology +3 othersNovember 1, 2025cancer_diagnosisfeature_extractionfoundation_model+8

    Histopathology foundation model extracting general-purpose features from H&E patches by distilling the UNI, Phikon, and CONCH pathology encoders.

    Pathology
    84Openness
  • MetaboFM

    2
    Georgia Institute of TechnologyOctober 23, 2025classificationfoundation_modelmass_spectrometry_imaging+6

    Vision Transformer foundation model for spatial metabolomics, pretrained on ~4,000 curated METASPACE mass spectrometry imaging datasets.

    MetabolomicsSpatial omicsImaging
    10Openness
  • CoLiPRI

    155.5K
    Microsoft Research +4 othersOctober 20, 2025contrastive_learningmultimodalradiology+3

    Vision-language encoders for chest CT that align 3D volumes with radiology reports using contrastive, report-generation, and masked-image objectives.

    Imaging
    60Openness
  • PUMBA

    1
    Florida International UniversityOctober 19, 2025protein_protein_interactionrepresentation_learningstate_space_model+2

    Protein-protein docking scorer that ranks interface poses from image-encoded patches, swapping PIsToN's Vision Transformer for Vision Mamba.

    Protein
    20Openness
  • CortexMAE

    532107
    Sophont +1 otherOctober 15, 2025brain_state_decodingfmrifoundation_model+5

    fMRI foundation model trained on cortical flat-map videos with masked autoencoding, showing power-law scaling on brain activity reconstruction.

    Biosignals
    68Openness
  • MIMO

    1227
    Peking University +1 otherOctober 11, 2025histologyinstruction_tuningmultimodal+6

    Medical vision-language model that takes visual prompts on an image and returns answers grounded in pixel-level segmentation masks.

    ImagingLanguage model
    11Openness
  • Shanghai Jiao Tong UniversityOctober 1, 2025brain_age_predictionbrain_mridensenet+8

    Brain MRI foundation model pairing DenseNet and Vision Transformer backbones with mixture of experts for disease diagnosis and brain age prediction.

    Imaging
    8Openness
  • PathQC

    1
    Sanford Burnham PrebysOctober 1, 2025biobankinghistologyquality_control+4

    Pan-tissue quality-control model that predicts RNA integrity and autolysis from H&E whole-slide images using frozen UNI foundation model embeddings.

    Pathology
    25Openness
  • ETH ZurichSeptember 23, 2025cancerdeep_setsgene_expression_prediction+4

    Predicts virtual single-cell spatial transcriptomics from H&E histology using frozen pathology foundation models and spot-level supervision.

    PathologySpatial omics
    58Openness
  • Central South UniversityAugust 11, 2025foundation_modelgene_expression_predictionhistology+6

    Histology vision transformer with 80M parameters that predicts spatial gene expression from H&E tissue images and transfers to tumor detection.

    PathologySpatial omics
    59Openness
  • MedGemma

    1.6K374127.1K
    Google Research +1 otherJuly 9, 2025clinical_reasoningelectronic_health_recordsfine_tuning+8

    Open medical multimodal models from Google, built on Gemma 3 with a medically tuned SigLIP vision encoder for clinical text and image understanding.

    Language modelImaging
    41Openness
  • MedSigLIP

    29837421K
    Google Research +1 otherJuly 9, 2025contrastive_learningembeddingsfoundation_model+7

    Medically tuned SigLIP encoder from Google that maps medical images and text into one embedding space for zero-shot classification and retrieval.

    ImagingPathology
    30Openness
  • Chongqing University of TechnologyJuly 1, 2025histologyinstruction_tuningmedical_image_understanding+5

    Biomedical vision-language assistant for medical visual question answering, pairing Phi-2 with a vision encoder in a 4.2B-parameter model.

    ImagingLanguage model
    15Openness
  • EyeCLIP

    8765
    The Hong Kong Polytechnic University +5 othersJune 21, 2025clipcontrastive_learningcross_modal_retrieval+11

    CLIP-based vision-language foundation model for eye imaging, enabling zero-shot disease detection and cross-modal retrieval across 11 modalities.

    ImagingLanguage model
    15Openness
  • Chiron-o1

    601421
    Shanghai AI Laboratory +2 othersJune 20, 2025chain_of_thoughtclinical_reasoninghistology+6

    Medical multimodal LLM (2B and 8B) trained for generalizable, step-by-step clinical reasoning via Mentor-Intern Collaborative Search.

    PathologyImaging
    67Openness
  • SensorLM

    58
    Google Research +2 othersJune 10, 2025activity_recognitioncontrastive_learningcross_modal_retrieval+6

    Sensor-language foundation models aligning wearable biosignals with text for zero-shot activity recognition, retrieval, and sensor captioning.

    BiosignalsLanguage model
    41Openness