All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 2532 of 32 filtered models

  • GeneJEPA

    355
    Biostate AIOctober 14, 2025cell_type_annotationfoundation_modelperturbation_prediction+2

    Self-supervised single-cell foundation model that predicts masked gene embeddings in latent space using a joint-embedding predictive architecture.

    Single-cell
    44Openness
  • GREmLN

    38
    Chan Zuckerberg Initiative +2 othersJuly 9, 2025cell_type_annotationchromatinfoundation_model+6

    Single-cell transcriptomics foundation model that encodes gene regulatory network structure into self-attention through graph signal processing.

    Single-cell
    80Openness
  • MORPH

    156
    Broad Institute +1 otherJuly 2, 2025attentioncell_paintingfoundation_model+5

    Single-cell perturbation-response model that predicts transcriptomic and imaging outcomes of unseen genetic perturbations via a VAE with attention.

    Single-cellImaging
    7Openness
  • STATE

    623117250
    Arc InstituteJune 27, 2025drug_discoveryfoundation_modelgene_expression+4

    Virtual cell transformer that predicts how cells respond to genetic, chemical, or signaling perturbations, generalizing to unseen cellular contexts.

    Single-cell
    21Openness
  • scGenePT

    3113
    Chan Zuckerberg InitiativeOctober 28, 2024foundation_modelgene_expressionmultimodal+4

    Single-cell perturbation prediction model that adds gene-level language embeddings from NCBI, UniProt, and Gene Ontology to scGPT representations.

    Single-cell
    90Openness
  • IMPA

    2657
    Theis LabJanuary 8, 2024autoencodercell_biologydrug_discovery+5

    Generative image perturbation autoencoder predicting cellular morphological responses to chemical and genetic perturbations from control images.

    Single-cell
    53Openness
  • GEARS

    386376
    SNAP (Stanford)August 17, 2023crispr_screen_analysisgenetic_interaction_predictiongenomics+5

    Perturbation prediction model that forecasts transcriptional responses to multi-gene CRISPR perturbations from scRNA-seq and a gene-gene graph.

    Single-cell
    68Openness
  • CPA

    149321
    Theis LabApril 15, 2021autoencoderdrug_response_modelinggenerative+5

    Single-cell perturbation prediction model that forecasts transcriptional responses to drug combinations and doses never experimentally measured.

    Single-cell
    78Openness