All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 409432 of 518 filtered models

  • PULSE

    67301.9K
    The Ohio State University +1 otherOctober 21, 2024cardiologyecgecg_interpretation+6

    Multimodal large language model that interprets 12-lead electrocardiogram images, answering open-ended clinical questions and generating ECG reports.

    BiosignalsImaging
    84Openness
  • CELL-Diff

    7
    Chan Zuckerberg InitiativeOctober 18, 2024cell_biologyde_novo_designdiffusion+7

    Diffusion model translating in both directions between protein sequences and fluorescence microscopy images to predict subcellular localization.

    Imaging
    87Openness
  • PSALM

    Harvard University +1 otherOctober 17, 2024language_modelproteomicstransfer_learning+1

    Protein domain annotation model pairing an ESM-2 backbone with a probabilistic decoder, bringing language-model sensitivity to Pfam-style assignment.

    Protein
    91Openness
  • Google ResearchOctober 17, 2024activity_recognitionfoundation_modelgenerative_modeling+5

    Wearable sensor foundation model pretrained on heart rate, accelerometer, skin temperature and other channels for activity recognition and imputation.

    Biosignals
    7Openness
  • DynaCLR

    1023
    Chan Zuckerberg InitiativeOctober 15, 2024cell_biologycell_state_classificationcnn+5

    Self-supervised contrastive model embedding cell and organelle dynamics from time-lapse microscopy for cell-state analysis without manual labels.

    Imaging
    71Openness
  • Eko HealthOctober 11, 2024disease_detectionecgfoundation_model+5

    Masked-autoencoder foundation model pretrained on digital-stethoscope heart sounds and single-lead ECG for cardiovascular disease detection.

    Biosignals
    22Openness
  • Columbia UniversityOctober 11, 2024language_modelprotein_dynamicsrepresentation_learning+4

    Protein language models trained on biophysical dynamics from MD simulations and normal-mode analysis; ESMDance builds on ESM2 for variant effects.

    Protein
    84Openness
  • D-BETA

    3613120
    Singapore Management University +1 otherOctober 3, 2024autoencodercontrastive_learningecg_classification+6

    ECG foundation model pretrained on 12-lead waveforms paired with clinical reports, enabling label-efficient and zero-shot cardiac diagnosis.

    BiosignalsLanguage model
    27Openness
  • CHIEF

    715545
    Harvard Medical School +2 othersSeptember 4, 2024cancer_detectionfoundation_modelhistology+8

    Weakly supervised histopathology foundation model pretrained on 60,530 whole-slide images for cancer detection, prognosis, and molecular prediction.

    Pathology
    15Openness
  • MaCo

    1276
    Shanghai AI LaboratorySeptember 2, 2024chest_x_raycontrastive_learningfoundation_model+9

    Chest X-ray foundation model that pairs masked image modeling with image-report contrastive alignment for zero-shot diagnosis and phrase grounding.

    Imaging
    74Openness
  • BELT-2

    12
    University of Technology SydneyAugust 28, 2024brain_to_textconformercontrastive_learning+6

    EEG-to-language foundation model that pairs a Q-Conformer encoder with a frozen LLM to decode coherent sentences from non-invasive brain recordings.

    BiosignalsLanguage model
    30Openness
  • NeuroLM

    163101
    Shanghai Jiao Tong University +1 otherAugust 27, 2024eegeeg_decodingfoundation_model+7

    Multi-task EEG foundation model that treats brain signals as a foreign language, pairing a text-aligned neural tokenizer with a GPT-2 backbone.

    BiosignalsLanguage model
    66Openness
  • gLM2

    92498K
    Tatta Bio +4 othersAugust 17, 2024language_modelmetagenomicsmultimodal+3

    Mixed-modality genomic language model encoding protein coding sequences as amino acids and intergenic DNA as nucleotides in native genomic context.

    DNA & GeneProteinLanguage model
    58Openness
  • ECG-Chat

    8248
    China University of Geosciences +2 othersAugust 16, 2024cardiologycontrastive_learningdisease_classification+6

    Multimodal ECG-language model aligning 12-lead waveforms with clinical report text for conversational cardiac diagnosis and report generation.

    BiosignalsLanguage model
    27Openness
  • ECG-FM

    30096
    University of Toronto +1 otherAugust 9, 2024cardiologycontrastive_learningdisease_classification+6

    Open transformer foundation model for 12-lead electrocardiograms, pretrained on 1.5 million unlabeled ECGs with a wav2vec 2.0 self-supervised recipe.

    Biosignals
    67Openness
  • BiomedGPT

    7084062
    Lehigh University +9 othersAugust 7, 2024foundation_modelhistologyimage_captioning+7

    Open-source, lightweight generalist vision-language foundation model for diverse biomedical imaging and text tasks.

    Language modelImagingPathology
    33Openness
  • LLaVA-Tri

    412944
    UC Santa Cruz +3 othersAugust 6, 2024foundation_modelhistologymultimodal+5

    Medical vision-language model trained on the MedTrinity-25M dataset, answering questions and generating text about radiology and histology images.

    Language modelPathology
    30Openness
  • Google ResearchAugust 2, 2024chest_radiographycnncontrastive_learning+9

    Chest X-ray embedding model built on ELIXR, producing image and image-text embeddings for data-efficient and zero-shot radiograph classification.

    Imaging
  • Medical SAM 2

    933257
    University of Oxford +1 otherAugust 1, 2024foundation_modelhistologyinteractive_segmentation+5

    SAM2-based foundation model that segments 2D and 3D medical images by treating volumes and image sets as video object tracking.

    Imaging
    74Openness
  • moPPIt

    144
    Duke UniversityJuly 31, 2024binding_site_predictionflow_matchinggenerative+6

    De novo peptide binder design framework that targets specific motifs, including disordered regions and conserved epitopes, from target sequence alone.

    Protein
    18Openness
  • scPRINT

    15555
    Institut PasteurJuly 29, 2024foundation_modelgene_networktransformer

    Single-cell foundation model pre-trained on 50 million cells for gene network inference, denoising, and cell type prediction.

    Single-cell
    90Openness
  • University of TokyoJuly 25, 2024bertchromatinchromatin_state_modeling+7

    Chromatin-state language model pretrained on ROADMAP annotations from 127 human cell types to find chromatin-state motifs and predict gene expression.

    DNA & Gene
    86Openness
  • PathChat

    478
    Mahmood Lab +4 othersJuly 10, 2024cancerdiagnosisfoundation_model+7

    Multimodal vision-language copilot for pathology that answers open-ended questions about histology images and reasons about differential diagnoses.

    PathologyLanguage model
    35Openness
  • Microsoft ResearchJuly 8, 2024conformational_ensemble_generationfine_tunedflow_matching+4

    Lightweight AlphaFlow variant that fine-tunes only AlphaFold's structure module, keeping the Evoformer frozen to cut conformational sampling cost.

    Protein
    21Openness