All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 385408 of 518 filtered models

  • ppLM-CO

    University of AlbertaDecember 12, 2024codon_optimizationgenerativelanguage_model+4

    Codon optimization framework that adds a generative head to a frozen ProtBert protein language model to design highly expressed coding sequences.

    RNAProtein
    12Openness
  • MedPLIB

    1343910
    Baidu +3 othersDecember 12, 2024histologymedical_image_groundingmixture_of_experts+8

    Biomedical multimodal LLM that answers questions about medical images and returns pixel-level segmentation masks, using a mixture-of-experts design.

    ImagingLanguage model
    80Openness
  • NormWear

    5931116
    University of California, San DiegoDecember 12, 2024disease_risk_predictionfoundation_modelmultimodal+5

    Multimodal foundation model for wearable physiological sensing across PPG, ECG, EEG, GSR, and IMU signals, using channel-aware attention.

    Biosignals
    77Openness
  • ProCyon

    6013
    Harvard Medical School +1 otherDecember 11, 2024drug_discoveryfoundation_modelmultimodal+6

    Multimodal foundation model integrating protein sequence, structure, and natural language to model and generate protein phenotypes across scales.

    ProteinLanguage modelSmall molecule
    83Openness
  • BiMediX2

    742120
    Mohamed bin Zayed University of Artificial IntelligenceDecember 10, 2024histologyinstruction_tuninglanguage_model+7

    Bilingual Arabic-English medical multimodal model built on Llama 3.1 for radiology, CT, and histology image understanding and question answering.

    Language modelImagingPathology
    11Openness
  • CBraMod

    329185
    Zhejiang UniversityDecember 10, 2024brain_computer_interfaceeegeeg_decoding+4

    EEG foundation model for brain-computer interface decoding, factorizing self-attention into parallel spatial and temporal branches.

    Biosignals
    78Openness
  • PLAID

    12714
    UC Berkeley +1 otherDecember 2, 2024de_novo_designdiffusiongenerative+4

    Latent diffusion model for controllable all-atom protein generation that co-designs sequence and structure while training on sequences alone.

    Protein
    77Openness
  • AIDO.DNA

    1681783
    genbio.aiDecember 1, 2024bertdnafoundation_model+7

    DNA foundation model scaling an encoder-only transformer to 7 billion parameters for variant effect prediction, gene expression, and sequence design.

    DNA & Gene
    27Openness
  • ESM Cambrian

    2.9K1.5K
    EvolutionaryScaleDecember 1, 2024foundation_modelrepresentation_learningtransformer

    Protein language model family at 300M, 600M, and 6B parameters, purpose-built for representation learning and outperforming ESM-2 at smaller scale.

    Protein
    16Openness
  • genbio.aiNovember 29, 2024foundation_modellanguage_modelmixture_of_experts+6

    Mixture-of-experts protein language model scaling to 16 billion parameters, applied to variant effect prediction and de novo protein design.

    Protein
    29Openness
  • AIDO.Cell

    16817108
    genbio.aiNovember 28, 2024bertcell_biologycell_type_annotation+7

    Single-cell RNA-seq foundation model pretrained on 50 million human cells, encoding the full transcriptome for annotation and perturbation modeling.

    Single-cell
    29Openness
  • AIDO.RNA

    168261.1K
    genbio.aiNovember 28, 2024bertfoundation_modellanguage_model+7

    RNA foundation model with 1.6 billion parameters, pretrained on 42 million non-coding RNA sequences for structure prediction and RNA sequence design.

    RNA
    18Openness
  • University of BirminghamNovember 18, 2024fine_tunedproperty_predictionprotein_function_prediction+3

    LoRA fine-tuning framework for ESM-2 with multi-head attention pooling and contact map enhancement for sequence-only protein property prediction.

    Protein
    13Openness
  • AnyECG

    45
    Zhejiang University +3 othersNovember 17, 2024anomaly_detectionarrhythmia_classificationelectrocardiogram+6

    ECG foundation model that learns discrete rhythm tokens from noisy real-world recordings for arrhythmia classification and anomaly detection.

    Biosignals
    10Openness
  • Harvard Medical School +1 otherNovember 12, 2024chromatingene_expressiongenomics+4

    Conditional autoregressive genomic language model trained on 13.6M mammalian promoters, scoring promoter variants, including indels, zero-shot.

    DNA & Gene
    89Openness
  • Earth Species ProjectNovember 11, 2024audio_captioningbioacousticsfoundation_model+5

    Audio-language foundation model for bioacoustics that answers natural-language questions about animal sounds, with zero-shot species classification.

    BiosignalsLanguage model
    61Openness
  • p-IgGen

    13297
    Oxford Protein Informatics Group (OPIG) +1 otherNovember 9, 2024antibodyde_novo_designfoundation_model+5

    Antibody language model that generates paired heavy and light variable domains, with a developability-conditioned variant for manufacturable designs.

    Protein
    68Openness
  • BC-Design

    213
    Gerstein Lab +1 otherNovember 3, 2024antibodyantibody_designenzyme+7

    Biochemistry-aware inverse folding model that augments backbone geometry with physicochemical point clouds, reaching ~90% sequence recovery on CATH.

    Protein
    75Openness
  • RhoFold+

    243216962
    ml4bioNovember 1, 2024foundation_modellanguage_modelstructure_prediction+1

    End-to-end RNA 3D structure prediction from sequence alone, coupling the RNA-FM language model with an Invariant Point Attention structure module.

    RNA
    65Openness
  • scGenePT

    3113
    Chan Zuckerberg InitiativeOctober 28, 2024foundation_modelgene_expressionmultimodal+4

    Single-cell perturbation prediction model that adds gene-level language embeddings from NCBI, UniProt, and Gene Ontology to scGPT representations.

    Single-cell
    90Openness
  • MAMMAL

    11891K
    IBM ResearchOctober 28, 2024cell_type_annotationdrug_discoveryfoundation_model+7

    Multi-modal, multi-task biological foundation model trained on 2 billion samples spanning proteins, small molecules, and single-cell gene expression.

    ProteinSmall moleculeSingle-cell
    74Openness
  • SleepGPT

    22
    South China University of Technology +1 otherOctober 28, 2024eeglanguage_modelself_supervised+3

    Language model over whole-night sleep stage sequences that corrects automated sleep staging and supplies features for sleep disorder diagnosis.

    Biosignals
    51Openness
  • IBM ResearchOctober 25, 2024drug_discoveryfoundation_modelgraph_neural_network+5

    Molecular foundation model that late-fuses graph, image, and SMILES encoders into one embedding for molecular property and drug target prediction.

    Small molecule
    77Openness
  • MedRegA

    462913
    Hong Kong University of Science and Technology +1 otherOctober 24, 2024histologyimage_classificationinstruction_tuning+8

    Region-aware bilingual medical multimodal LLM that handles image- and region-level vision-language tasks across eight imaging modalities.

    PathologyLanguage model
    65Openness