Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 1–24 of 93 filtered models
Tissue reconstruction model placing dissociated single cells into spatial coordinates by predicting pairwise distances in a learned embedding space.
Pan-cancer clinico-genomic model for treatment response and survival prediction, transferring zero-shot to unseen hospitals and cancer types.
Cell-level pathology foundation model that types every nucleus on a routine H&E slide, supervised by paired Xenium spatial transcriptomics.
Whole-transcriptome inference from label-free live-cell phase-contrast microscopy, predicting 18,085 genes without staining or lysing the cells.
Single-cell metabolome inference from scRNA-seq, learned from spatially paired Visium and MALDI-MSI sections by multiple-instance learning.
Virtual spatial transcriptomics model that infers spot-level gene expression from H&E slides by fusing tile, slide, and spatial-position features.
Histopathology foundation model predicting spatial gene expression from H&E slides at single-cell resolution via linear whole-slide attention.
Spatial transcriptomics foundation model giving gene-, cell- and neighborhood-scale embeddings zero-shot, plus in-silico gene knockout in tissue.
Spatial proteomics foundation model for multiplex immunofluorescence, with a 268-marker vocabulary and marker-conditioned 768-dimensional embeddings.
Spatial proteomics foundation model trained on over 51 million single cells to learn panel-robust cell representations across platforms.
Cell type annotation model mapping human single-cell and spatial transcriptomes onto one hierarchical typology of 381 types across 23 tissues.
Spatial proteomics prediction from routine H&E slides, generating 21-channel virtual multiplex immunofluorescence maps of the tumor microenvironment.
Spatial multi-omics integration model aligning RNA, protein, metabolomics, and histology to map cell-state gradients and cell-cell interactions.
Spatial transcriptomics prediction from histology using conditional neural fields to reconstruct continuous gene expression fields.
Histopathology model reconstructing tissue-wide single-cell gene expression from H&E slides, using sparse TMA measurements as molecular anchors.
Variational autoencoder trained on scRNA-seq and applied frozen to impute unmeasured genes and denoise spatial transcriptomics profiles.
Multimodal foundation model pretrained on 1.76B histology and spatial transcriptomics spots, inferring molecular state from whole-slide images.
Tri-modal foundation model unifying histology images, spatial transcriptomics, and language for zero-shot pathology and spatial biology reasoning.
Diffusion transformer for virtual tissue synthesis, generating H&E histopathology patches conditioned on spatial gene expression and morphology.
Spatial transcriptomics foundation model for the tumor microenvironment, giving TME-aware embeddings and in silico perturbation from one checkpoint.
Spatial transcriptomics deconvolution foundation model whose rank-based spot encoding transfers across tissues and platforms without retraining.
Multi-organ foundation model aligning histology images with spatial-transcriptomics profiles for zero-shot expression and survival prediction.
Virtual spatial transcriptomics foundation model predicting pan-cancer, spatially-resolved single-cell gene expression from H&E histology slides.