All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 1–24 of 42 filtered models
LYNX
9192—Spatial multi-omics integration model aligning RNA, protein, metabolomics, and histology to map cell-state gradients and cell-cell interactions.
Spatial omicsSingle-cell28OpennessHiFi-ST
———Spatial transcriptomics prediction from histology using conditional neural fields to reconstruct continuous gene expression fields.
PathologySpatial omics21OpennessCellpin
———Variational autoencoder trained on scRNA-seq and applied frozen to impute unmeasured genes and denoise spatial transcriptomics profiles.
Spatial omicsSingle-cell22OpennessSQUALL
—207—Multimodal foundation model pretrained on 1.76B histology and spatial transcriptomics spots, inferring molecular state from whole-slide images.
PathologySpatial omics6OpennessSciCore-Omics
10—54Tri-modal foundation model unifying histology images, spatial transcriptomics, and language for zero-shot pathology and spatial biology reasoning.
PathologySpatial omics65OpennessSTMDiT
—3—Diffusion transformer for virtual tissue synthesis, generating H&E histopathology patches conditioned on spatial gene expression and morphology.
PathologySpatial omics44OpennessTMEformer
———Spatial transcriptomics foundation model for the tumor microenvironment, giving TME-aware embeddings and in silico perturbation from one checkpoint.
Spatial omics10OpennessSpaRank
———Spatial transcriptomics deconvolution foundation model whose rank-based spot encoding transfers across tissues and platforms without retraining.
Spatial omics8OpennessBRIDGE
———The University of Hong KongMay 8, 2026contrastive_learningfoundation_modelgene_expression_prediction+8Multi-organ foundation model aligning histology images with spatial-transcriptomics profiles for zero-shot expression and survival prediction.
PathologySpatial omics31OpennessPhoenix
—20—Virtual spatial transcriptomics foundation model predicting pan-cancer, spatially-resolved single-cell gene expression from H&E histology slides.
PathologySpatial omics8OpennessH2O
———Tencent AI for Life Science Lab +2 othersApril 24, 2026contrastive_learningfoundation_modelgene_expression+6Pathology foundation model that infers spatial transcriptomics and proteomics directly from routine H&E whole-slide images, with no spatial assay.
PathologySpatial omics7OpennessHalo
———Whole-cell segmentation model for spatial transcriptomics that fuses DAPI nuclear images with RNA transcript density to recover true cell boundaries.
Spatial omics63OpennessMuPD
—280—Diffusion-transformer pathology model embedding H&E histology, RNA profiles, and clinical text in a latent space for zero-shot cross-modal synthesis.
PathologySpatial omics15OpennessSTORM
—2—Stanford UniversityApril 4, 2026clinical_outcome_predictionfoundation_modelgene_expression_prediction+6Spatial transcriptomics foundation model pairing gene expression with H&E histology for spatial domain discovery and clinical outcome prediction.
Spatial omicsPathology17OpennessSpatialFusion
40——Multimodal foundation model integrating spatial transcriptomics, H&E histopathology, and pathway scores for single-cell niche discovery.
Spatial omicsSingle-cellPathology71OpennessCell-centric microscopy foundation model that distills morphology and microenvironment views into a unified embedding for virtual spatial omics.
Spatial omicsImagingPathology15OpennessSEAL
48121—Vision-omics finetuning that aligns pathology foundation models with spatial transcriptomics so morphology features predict local gene expression.
PathologySpatial omics32OpennessSTPAINTER
—61—University of Science and Technology of China +2 othersFebruary 13, 2026cancerdiffusionfoundation_model+4Pan-cancer pretrained diffusion model imputing genome-wide expression from sparse spatial transcriptomics panels, zero-shot and reference-free.
Spatial omicsSingle-cell4OpennessMoLF
———Pan-cancer model predicting spatial gene expression from H&E histology using conditional flow matching with a mixture-of-experts velocity field.
PathologySpatial omics9OpennessSAGE-FM
———Spatial transcriptomics foundation model built on a lightweight graph convolutional network and trained by masked central-spot prediction.
Spatial omicsSingle-cell10OpennessSingle-cell RNA-seq language model that treats cells as gene-expression tokens, synthesizing whole transcriptomes from tissue and disease metadata.
Single-cellSpatial omics2OpennessOmniCell
———Transcriptomic foundation model pretrained on 67M single-cell and spatial profiles, modeling gene expression and inter-cellular dependencies.
Single-cellSpatial omics9Openness