University of Warsaw

Bacteriophage gene function prediction from genomic synteny, pairing protein language model embeddings with circular attention. AUC above 0.84.

Antimicrobial peptide generator that conditions diffusion on net charge, mean hydrophobicity and length, with de novo, analog and motif-guided modes.

Blind protein-ligand docking as a single transformer pass over distance matrices, at hundredths of a second per complex on one GPU.