University of Tsukuba

Peptide toxicity prediction that fuses frozen ProtT5 residue embeddings with ESMFold-predicted structure in an E(3)-equivariant graph neural network.

Kinase-substrate specificity prediction from sequence alone, using ESM-2 embeddings to score phosphorylation across whole mammalian kinomes.

Single-cell foundation model pretrained on 21 million mouse scRNA-seq profiles, with ortholog conversion extending its use to human transcriptomes.

Conditional GAN that generates small molecules against a protein-protein interaction interface, encoding the complex with graph attention networks.