University of California, Berkeley

Gene regulation model that conditions a pretrained DNA sequence embedding on CpG methylation to capture cell-type and allele-specific regulation.

RNA inverse-folding language model that designs nucleotide sequences satisfying a target secondary structure, fixed bases, and coding constraints.

Phenotypic screening model for neuronal activity, encoding network-level calcium dynamics of iPSC-derived neurons into single-cell embeddings.

4B-parameter generative genome foundation model trained on assembled environmental metagenomes for microbial representation and de novo DNA design.