Simon Fraser University

DNA barcode foundation model whose masked-autoencoder pretraining keeps mask tokens out of the encoder, for arthropod taxonomic classification.

Epigenome imputation transformer predicting raw read counts with calibrated confidence intervals, and denoising low-quality experiments in place.

Structure-based drug design that generates molecules as synthetic pathways over 1.2M purchasable building blocks, so each design carries its route.

De novo small molecule generation that assembles drug-like graphs atom by atom, pretrained on cheap property proxies and finetuned per objective.