Rochester Institute of Technology

Post-translational modification site prediction over frozen ProtT5 embeddings, sharing one model across six PTM types via anchor-based flow matching.

Ice-binding protein classifiers over frozen ESM-2 embeddings, separating antifreeze from ice-nucleation proteins across bacterial proteomes.

Plant DNA-binding protein prediction that averages a ProtT5 sequence-embedding classifier with a SaProt structure-aware one at the score level.