An Austrian medical university and teaching hospital in Vienna, pursuing precision medicine, clinical research, and machine learning in healthcare.
InstaDeep / Research Institute of Molecular Pathology (IMP) / Medical University of Vienna / Cornell University / Cold Spring Harbor Laboratory
Released December 22, 2025
Multi-species genomics foundation model spanning representation learning, functional-track prediction, and sequence generation at 1 Mb context.
Whitehead Institute for Biomedical Research / MIT / Medical University of Vienna
Released March 16, 2025
Single-cell model inferring which developmental signaling pathways are active from scRNA-seq, trained on combinatorial stem-cell perturbation screens.
TU Dresden / National Center for Tumor Diseases Dresden / German Cancer Research Center (DKFZ) / Mayo Clinic / Fred Hutchinson Cancer Center / Medical University of Vienna / University of Bern
Released February 18, 2025
Whole-slide pathology embedding framework that ranks tiles, keeps only the 25 most informative, and encodes a slide in 2.27 seconds.
CeMM Research Center for Molecular Medicine / Ludwig Boltzmann Institute for Network Medicine / Medical University of Vienna / University of Vienna / Medical University of Innsbruck / University of Cologne / Helmholtz Munich / KU Leuven / University of Melbourne
Released November 15, 2024
Tissue-specific histological aging clocks that read biological age and per-organ age gaps from H&E whole-slide images and from blood gene expression.
CeMM Research Center for Molecular Medicine / Medical University of Vienna / St. Anna Children's Cancer Research Institute / University of Vienna / Max Perutz Labs / Ludwig Boltzmann Institute for Network Medicine
Released October 18, 2024
Contrastive transcriptome-text model for free-text search, zero-shot cell annotation and natural-language chat over bulk and single-cell RNA-seq.
IBM Research / University of Bern / Inselspital, Bern University Hospital / Medical University of Vienna / Lindenhofspital Bern / University of Duisburg-Essen / ETH Zurich / Lausanne University Hospital / University of Lausanne
Released December 1, 2023
Generative toolkit that synthesizes six aligned immunohistochemistry markers from one H&E histopathology image, trained on unpaired stains.