Indian Institute of Technology Kharagpur

Coding potential classifier for assembled transcripts, joining pretrained RNA transformer embeddings with ORF and UTR descriptors in a random forest.

Phylogenetic tree inference from unaligned nucleotide sequences, using a 2D genomic-footprint encoding and CNN classification of triplet topologies.

TCR-epitope binding prediction with a dual-branch transformer-CNN, inside a pipeline that ranks cancer neoepitopes from patient sequencing data.