Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 1–24 of 62 filtered models
Sleep staging from one behind-the-ear electrode pair, feeding automated REM-sleep-without-atonia scoring and REM sleep behaviour disorder detection.
Single-molecule localisation microscopy analyser that infers interpretable structural descriptors and regenerates matched synthetic datasets.
Protein-protein interface prediction that summarizes molecular surface patches with persistent homology descriptors, at 0.77 test AUC.
Cryo-EM density enhancement for protein-ligand binding sites, sharpening weak ligand maps with a 3D Swin-Conv UNet trained on 6,511 complexes.
Optical chemical structure recognition model that turns molecule images into SMILES, reaching 93.8% exact match on USPTO with full stereochemistry.
Cell type annotation model mapping human single-cell and spatial transcriptomes onto one hierarchical typology of 381 types across 23 tissues.
T-cell receptor-MHC restriction prediction from amino acid sequence, mapping TCRs to their restricting HLA allele at 0.97 held-out AUC.
Enhancer RNA mapping model that locates eRNA loci genome-wide from DNA sequence and aggregated RNA-seq signal using a CNN-transformer architecture.
Supervised variational autoencoder that learns a tissue-aware latent space for bulk RNA-seq, trained on harmonized TCGA, GTEx, and ARCHS4 data.
Fine-tuned Enformer derivative that annotates cis-regulatory elements from DNA sequence, emitting enhancer, promoter, and insulator class labels.
Cryo-EM ligand modeling pipeline that detects bound ligand densities in a map, then reconstructs their atomic structures with a diffusion model.
Protein function prediction model that fuses sequence, structure, text, and interaction embeddings with learned gating to assign Gene Ontology terms.
Chromatin-informed foundation model predicting regulatory activity and chromatin state directly from plant genomic sequence in Arabidopsis and rice.
Hybrid framework that predicts ribosome location profiles from mRNA sequence alone, pairing a structure-aware TASEP simulation with a Mamba polisher.
Predicts protein complex stoichiometry from amino acid sequence alone, ranking copy numbers in seconds and exporting AlphaFold3-ready JSON files.
Automated sleep staging for polysomnography in Parkinson's disease and isolated REM sleep behaviour disorder, with per-epoch confidence estimates.
Graph-attention model that predicts A-to-I RNA editing from sequence and secondary structure, treating RNA as a graph with base-pairing edges.
Bioimage restoration model pairing a NAFNet backbone with a perceptual GAN loss, best on LPIPS in 7 of 8 AI4Life microscopy benchmarks.
Prime editing efficiency prediction that quantifies per-pegRNA uncertainty, pairing a Dirichlet outcome model with conformal coverage guarantees.
Protein conformational sampling framework that steers a retrained OpenFold with diverse secondary-structure predictions to recover alternative states.
Pan-tissue quality-control model that predicts RNA integrity and autolysis from H&E whole-slide images using frozen UNI foundation model embeddings.
Protein solubility mutation-effect predictor built on an anti-symmetric Siamese geometric graph network trained on deep mutational scanning data.
Protein-protein interaction predictor fusing evolutionary and structural embeddings to screen bacterial and host-pathogen proteomes in minutes.
Splice donor and acceptor site prediction from raw DNA, scoring every position of a 20 kb window with an ensemble of dilated residual CNNs.