All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 110 of 10 filtered models

  • ATOMICA

    3
    Harvard UniversityMarch 16, 2026binding_site_predictionfoundation_modelgraph_neural_network+6

    Geometric deep learning model that learns universal atomic-scale representations of intermolecular interfaces across proteins, small molecules, ions, lipids, and nucleic acids.

    ProteinSmall moleculeRNA
    88Openness
  • BPD

    1
    Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Fifth-place solution from the CZII CryoET Kaggle competition; an ensemble of four lightweight 3D U-Nets for protein particle localization in cryo-ET tomograms.

    Imaging
    67Openness
  • TopCUP

    2
    Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    First-place solution from the CZII CryoET Object Identification Kaggle competition; an ensemble of 3D EfficientNet-encoder U-Nets for multi-class protein particle picking.

    Imaging
    96Openness
  • Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Seventh-place CZII CryoET Kaggle solution; an ensemble of three heatmap-predicting 3D segmentation models using ResNet50d and EfficientNetV2-M backbones for particle picking.

    Imaging
    95Openness
  • Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Eighth-place CZII CryoET Kaggle solution; a weighted model soup of tiny, medium, and large 3D U-Nets pretrained on simulated data and fine-tuned on experimental cryo-ET tomograms.

    Imaging
    86Openness
  • SABER

    16
    Chan Zuckerberg InitiativeJanuary 1, 2025cryo_etfoundation_modelsegmentation+3

    A SAM2-based deep learning framework for vesicle segmentation in cryo-ET tomograms and 2D micrographs, supporting both zero-shot and fine-tuned inference.

    Imaging
    78Openness
  • Octopi

    9
    Chan Zuckerberg InitiativeJanuary 1, 2025cnncryo_etparticle_picking+3

    A deep learning framework for multi-class protein particle picking in cryo-ET tomograms using a 3D U-Net with automated architecture search via Bayesian optimization.

    Imaging
    81Openness
  • CryoLens

    16
    Chan Zuckerberg InitiativeJanuary 1, 2025cnncryo_etgenerative+6

    A variational autoencoder for interpretable 3D reconstruction and representation learning of protein subtomograms from cryo-ET data, trained on 5.8 million synthetic particles.

    Imaging
    74Openness
  • WaveOrder

    44
    Chan Zuckerberg InitiativeDecember 13, 2024cnnfluorescence_microscopyimage_restoration+2

    A differentiable wave-optical framework for label-agnostic computational microscopy of biomolecular density and orientation across diverse imaging modalities.

    Imaging
    100Openness
  • Cryo-IEF

    70
    Westlake UniversityNovember 6, 2024contrastive_learningcryo_emfoundation_model+3

    Foundation model pre-trained on 65M cryo-EM particle images via contrastive learning, enabling zero-shot classification, pose clustering, and quality assessment.

    Imaging
    42Openness