All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 111 of 11 filtered models

  • mir-SFM

    ETH ZurichJune 4, 2026contrastive_learningcross_modal_retrievaldual_encoder+6

    Specificity Foundation Model that predicts microRNA-mRNA target specificity from sequence using a physics-derived dual-encoder with symmetric contrastive learning.

    RNA
    25Openness
  • ProtmRNA

    2
    Fudan University +2 othersMay 20, 2026codongene_expressionlanguage_model+7

    A cross-modal transfer-learning model that adapts the ESM-2 650M protein language model to mRNA analysis by swapping amino-acid tokens for codon tokens, applied to mRNA benchmarks without re-training.

    RNA
    11Openness
  • Carnegie Mellon UniversityApril 3, 2026mambamrnamrna_design+6

    A hybrid simulation and machine-learning framework that predicts ribosome location profiles from mRNA sequence alone, combining a structure-aware TASEP with a Mamba polisher.

    RNA
    18Openness
  • Chinese Academy of SciencesApril 2, 2026codoncodon_optimizationfoundation_model+8

    Autoregressive generative model pretrained on 30 million full-length natural mRNA sequences that jointly optimizes 5' UTR, CDS, and 3' UTR for therapeutic mRNA stability and translation efficiency.

    RNA
    10Openness
  • EVA

    1861
    GENTEL LabMarch 24, 2026aptameraptamer_designcircular_rna+9

    Long-context generative RNA foundation model trained on 114 million full-length RNA sequences, supporting de novo design of tRNAs, aptamers, CRISPR guide RNAs, mRNAs, and circular RNAs.

    RNA
    72Openness
  • Pro2RNA

    Kitasato UniversityMarch 18, 2026codon_optimizationcodon_usagelanguage_model+5

    Multimodal reverse-translation language model that generates species-aware mRNA coding sequences from protein sequences, conditioned on host taxonomy.

    RNAProtein
    10Openness
  • SpeciefAI

    University of EdinburghMarch 16, 2026antibodyantibody_designgenerative+6

    Transformer that generates multi-species antibody and nanobody framework regions at the mRNA level, conditioned on input CDRs, across six species.

    ProteinRNA
    46Openness
  • CDS-BART

    115
    MOGAM Institute for Biomedical ResearchMarch 12, 2026bartfoundation_modelgene_expression+5

    A BART-based foundation model for mRNA coding-sequence analysis, pretrained by denoising across nine taxonomic groups and fine-tunable for expression, stability, and riboswitch tasks.

    RNA
    63Openness
  • NUWA

    Kitasato UniversityFebruary 4, 2026bertfoundation_modellanguage_model+5

    An mRNA language foundation model trained on ~115M coding sequences across the tree of life for unified mRNA sequence perception and generation.

    RNADNA & Gene
    16Openness
  • mRNA-GPT

    Kitasato University +2 othersDecember 24, 2025codoncodon_optimizationfoundation_model+7

    GPT-2-style generative foundation model pretrained on ~165M mRNA coding sequences across all three domains of life for de novo CDS generation and design.

    RNA
    39Openness
  • 5' UTR-LM

    94108
    Princeton UniversityApril 1, 2024foundation_modelmrnasequence_design+1

    A transformer language model pretrained on 5' UTR sequences across five species to predict mRNA translation efficiency, ribosome loading, and expression levels.

    RNA
    60Openness