All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 113 of 13 filtered models

  • RNAJog

    2
    Shanghai Jiao Tong UniversityJune 20, 2026autoregressivecodoncodon_optimization+7

    Autoregressive generative model that uses reinforcement learning to optimize mRNA codon sequences for MFE, CAI, and GC content.

    RNA
    9Openness
  • RNARL

    Shanghai Jiao Tong University +2 othersJune 13, 2026codoncodon_optimizationgenerative+6

    Reinforcement-learning generative framework for multi-objective RNA codon optimization that generalizes across six species and five RNA types.

    RNA
    4Openness
  • mir-SFM

    2
    ETH ZurichJune 4, 2026contrastive_learningcross_modal_retrievaldual_encoder+6

    Foundation model that predicts microRNA-mRNA target specificity from sequence, using a dual-encoder trained with a symmetric contrastive objective.

    RNA
    25Openness
  • ProtmRNA

    2
    Fudan University +2 othersMay 20, 2026codongene_expressionlanguage_model+7

    Codon-level mRNA language model adapted from ESM-2 650M by swapping amino-acid tokens for codon tokens, transferring protein knowledge to mRNA tasks.

    RNA
    11Openness
  • seq2ribo

    10365
    Carnegie Mellon UniversityApril 3, 2026mambamrnamrna_design+4

    Hybrid framework that predicts ribosome location profiles from mRNA sequence alone, pairing a structure-aware TASEP simulation with a Mamba polisher.

    RNA
    18Openness
  • Chinese Academy of SciencesApril 2, 2026codoncodon_optimizationfoundation_model+8

    Autoregressive model for therapeutic mRNA design that jointly generates 5' UTR, CDS, and 3' UTR, pretrained on 30 million full-length natural mRNAs.

    RNA
    10Openness
  • EVA

    821
    GENTEL LabMarch 24, 2026aptameraptamer_designcircular_rna+9

    Generative RNA foundation model trained on 114 million full-length sequences for de novo design of tRNAs, aptamers, CRISPR guide RNAs, and mRNAs.

    RNA
    72Openness
  • Pro2RNA

    Kitasato UniversityMarch 18, 2026codon_optimizationcodon_usagelanguage_model+5

    Multimodal reverse-translation language model that generates species-aware mRNA coding sequences from protein sequences, conditioned on host taxonomy.

    RNAProtein
    10Openness
  • SpeciefAI

    University of EdinburghMarch 16, 2026antibodyantibody_designgenerative+5

    Transformer that generates multi-species antibody and nanobody framework regions at the mRNA level, conditioned on input CDRs, across six species.

    ProteinRNA
    46Openness
  • CDS-BART

    9
    MOGAM Institute for Biomedical ResearchMarch 12, 2026bartfoundation_modelgene_expression+5

    Coding-sequence foundation model for mRNA design, pretrained as a BART denoising encoder-decoder on mRNA from nine taxonomic groups.

    RNA
    63Openness
  • NUWA

    Kitasato UniversityFebruary 4, 2026bertfoundation_modellanguage_model+5

    mRNA language foundation model trained on ~115M protein-coding sequences across the tree of life, unifying mRNA perception and generation.

    RNADNA & Gene
    16Openness
  • Kitasato University +2 othersDecember 24, 2025codoncodon_optimizationfoundation_model+7

    GPT-style generative language model for mRNA coding sequences, pretrained across bacteria, eukaryotes, and archaea for de novo CDS design.

    RNA
    39Openness
  • 5' UTR-LM

    95122113
    Princeton UniversityApril 1, 2024foundation_modelmrnasequence_design+1

    Transformer language model for 5' UTR sequences that predicts mRNA translation efficiency, ribosome loading, and protein expression levels.

    RNA
    60Openness