All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 97120 of 209 filtered models

  • FlexRibbon

    2
    Beijing Zhongguancun AcademyOctober 10, 2025diffusionfoundation_modelmultimodal+5

    Protein foundation model with 3B parameters, pretrained jointly on sequence and 3D structure via masked language modeling and diffusion denoising.

    Protein
    20Openness
  • Chinese University of Hong Kong +1 otherOctober 3, 2025multimodalmutation_effect_predictionproteomics+3

    Structure-conditioned fine-tune of ESM2 for protein mutation-effect prediction, matching ESM3-level accuracy after roughly an hour of fine-tuning.

    Protein
    25Openness
  • BioVERSE

    2
    IBM ResearchOctober 1, 2025cell_biologycell_type_annotationcross_modal_question_answering+5

    Multimodal biomedical framework aligning frozen single-cell and protein model encoders to an LLM's embedding space for zero-shot reasoning.

    Language modelSingle-cellProtein
    23Openness
  • Shanghai AI LaboratorySeptember 25, 2025foundation_modelmultimodalprotein_function_prediction+2

    Multimodal scientific foundation model unifying protein, DNA/RNA, and small-molecule structure in one token vocabulary for cross-domain reasoning.

    ProteinDNA & GeneSmall molecule
    66Openness
  • EiRA

    2
    Hunan UniversitySeptember 2, 2025binder_designdnagenerative+6

    Protein binder design model post-trained from a multimodal protein language model to bind proteins, peptides, small molecules, and nucleic acids.

    Protein
    13Openness
  • Broad InstituteAugust 17, 2025chromatinfoundation_modelgene_regulation+7

    Multimodal foundation model predicting genome-wide binding of chromatin-associated proteins from protein sequence, DNA sequence, and chromatin state.

    DNA & GeneProtein
    25Openness
  • CLASP

    44
    McGill UniversityAugust 10, 2025contrastive_learningcross_modal_retrievalgraph_neural_network+7

    Tri-modal contrastive model aligning protein structure, sequence, and text in a shared space for zero-shot cross-modal retrieval and classification.

    Protein
    42Openness
  • MedGemma

    1.6K374127.1K
    Google Research +1 otherJuly 9, 2025clinical_reasoningelectronic_health_recordsfine_tuning+8

    Open medical multimodal models from Google, built on Gemma 3 with a medically tuned SigLIP vision encoder for clinical text and image understanding.

    Language modelImaging
    41Openness
  • MedSigLIP

    29837421K
    Google Research +1 otherJuly 9, 2025contrastive_learningembeddingsfoundation_model+7

    Medically tuned SigLIP encoder from Google that maps medical images and text into one embedding space for zero-shot classification and retrieval.

    ImagingPathology
    30Openness
  • University of Oxford +5 othersJuly 1, 2025clinical_outcome_predictioncross_modality_generationdiagnosis+8

    Multimodal foundation model for cardiac biosignals, pretrained by masked modeling on ECG, PPG, and clinical text from ~1.7 million individuals.

    BiosignalsLanguage model
    26Openness
  • Chongqing University of TechnologyJuly 1, 2025histologyinstruction_tuningmedical_image_understanding+5

    Biomedical vision-language assistant for medical visual question answering, pairing Phi-2 with a vision encoder in a 4.2B-parameter model.

    ImagingLanguage model
    15Openness
  • MELP

    311818
    The University of Hong KongJune 27, 2025contrastive_learningecg_classificationelectrocardiogram+4

    Multi-scale ECG-language model that aligns 12-lead ECG signals with clinical text at token, beat, and rhythm levels for zero-shot cardiac diagnosis.

    BiosignalsLanguage model
    68Openness
  • MOJO

    4045
    InstaDeepJune 25, 2025bertdna_methylationfoundation_model+7

    Bimodal masked language model that jointly encodes bulk RNA-seq expression and DNA methylation into patient-level embeddings for cancer genomics.

    RNADNA & Gene
    29Openness
  • Monash UniversityJune 23, 2025classificationconnectomicsfmri+7

    5.6M-parameter multimodal foundation model fusing fMRI time series with diffusion-MRI structural connectivity in a shared ROI embedding space.

    ImagingBiosignals
    71Openness
  • EyeCLIP

    8765
    The Hong Kong Polytechnic University +5 othersJune 21, 2025clipcontrastive_learningcross_modal_retrieval+11

    CLIP-based vision-language foundation model for eye imaging, enabling zero-shot disease detection and cross-modal retrieval across 11 modalities.

    ImagingLanguage model
    15Openness
  • Chiron-o1

    601421
    Shanghai AI Laboratory +2 othersJune 20, 2025chain_of_thoughtclinical_reasoninghistology+6

    Medical multimodal LLM (2B and 8B) trained for generalizable, step-by-step clinical reasoning via Mentor-Intern Collaborative Search.

    PathologyImaging
    67Openness
  • LucaVirus

    745155
    Sun Yat-sen University +1 otherJune 14, 2025antibody_designfoundation_modelgenomics+8

    Multimodal viral foundation model over nucleotide and protein sequence, built for virus discovery, function annotation, and antibody design.

    DNA & GeneProtein
    88Openness
  • PhysioWave

    18914
    ETH Zurich +2 othersJune 12, 2025arrhythmia_detectionecgeeg+9

    Physiological signal foundation model for ECG, EMG, and EEG pairing learnable multi-scale wavelet decomposition with masked transformer pretraining.

    Biosignals
    80Openness
  • SensorLM

    58
    Google Research +2 othersJune 10, 2025activity_recognitioncontrastive_learningcross_modal_retrieval+6

    Sensor-language foundation models aligning wearable biosignals with text for zero-shot activity recognition, retrieval, and sensor captioning.

    BiosignalsLanguage model
    41Openness
  • Lingshu

    3198144.7K
    DAMO Academy +1 otherJune 8, 2025clinical_reasoningfoundation_modelhistology+7

    Generalist medical multimodal LLM for image understanding, visual question answering, and report generation across twelve-plus imaging modalities.

    ImagingLanguage model
    70Openness
  • QoQ-Med

    5238465
    MITMay 31, 2025ecgfoundation_modelhistology+7

    Multimodal clinical foundation model reasoning jointly over 2D and 3D medical images, ECG time-series, and text reports across nine clinical domains.

    ImagingBiosignalsLanguage model
    74Openness
  • BioCLIP 2

    774348.7K
    Imageomics InstituteMay 29, 2025biodiversitycontrastive_learningfoundation_model+6

    Vision foundation model for the tree of life, trained on 214 million organism images across 952,000 taxa for zero-shot species classification.

    Imaging
    93Openness
  • BrainOmni

    7128
    Tsinghua University +3 othersMay 18, 2025brain_signal_classificationeegfoundation_model+7

    Brain foundation model unifying EEG and MEG in a single encoder via a shared discrete tokenizer that transfers across sensor layouts and montages.

    Biosignals
    80Openness
  • University of Cambridge +1 otherMay 1, 2025brain_mrifoundation_modelhypergraph_neural_network+5

    Brain MRI segmentation foundation model trained on 66,000+ image-label pairs across 14 MRI sub-modalities, with a hypergraph dynamic adapter.

    Imaging
    26Openness