All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 433456 of 518 filtered models

  • Shenzhen Research Institute of Big Data +1 otherJune 27, 2024histologyinstruction_tuningmedical_image_understanding+5

    Open medical multimodal LLMs (7B and 34B) for visual question answering over radiology, pathology, and endoscopy images, trained on PubMedVision.

    PathologyLanguage model
    52Openness
  • CREMA

    7
    Medical AI Co., Ltd.June 26, 2024contrastive_learningecg_diagnosticselectrocardiography+5

    Self-supervised foundation model for 12-lead ECG, pairing masked autoencoder pretraining with contrastive regularization for robust diagnostics.

    Biosignals
    10Openness
  • BrainMAE

    10
    Pennsylvania State UniversityJune 24, 2024age_predictionautoencoderbehavior_prediction+7

    Self-supervised masked autoencoder for functional MRI that learns representations from BOLD time-series with per-ROI embeddings and graph attention.

    Biosignals
    17Openness
  • OPERA

    8346
    University of CambridgeJune 23, 2024autoencodercontrastive_learningcough+7

    Respiratory acoustic foundation models pretrained on roughly 136K cough and breathing recordings for disease detection and lung function estimation.

    Biosignals
    59Openness
  • Isoformer

    9011722
    InstaDeepJune 20, 2024foundation_modelgene_expressionmultimodal+4

    Multimodal model fusing pre-trained DNA, RNA, and protein encoders through cross-attention to predict tissue-specific transcript isoform expression.

    RNADNA & GeneProtein
    26Openness
  • VISTA3D

    292776.6K
    NVIDIAJune 7, 2024cnnctfoundation_model+5

    Medical image segmentation foundation model for 3D CT and MRI, covering 127 anatomical classes automatically plus interactive point-prompt refinement.

    Imaging
    73Openness
  • CellFM

    11078
    Sun Yat-sen UniversityJune 6, 2024cell_biologyfoundation_modeltranscriptomics+1

    Single-cell foundation model with 800M parameters trained on ~100 million human cells, for annotation, perturbation prediction, and gene analysis.

    Single-cell
    26Openness
  • MULAN

    251047
    Skolkovo Institute of Science and TechnologyMay 30, 2024fine_tunedmultimodalproperty_prediction+4

    Multimodal protein language model extending ESM-2 and SaProt with a Structure Adapter over residue torsion angles for protein function prediction.

    Protein
    83Openness
  • LaBraM

    646398
    Shanghai Jiao Tong UniversityMay 29, 2024abnormal_detectionbrain_computer_interfaceeeg+6

    EEG foundation model that learns transferable brain-signal representations with a vector-quantized tokenizer and masked transformer pretraining.

    Biosignals
    72Openness
  • Rice UniversityMay 26, 2024arrhythmia_detectioncontrastive_learningconvnext+6

    ECG foundation model that learns 12-lead waveform representations by contrastively aligning each recording with machine-generated cardiological text.

    Biosignals
    63Openness
  • CellSeg3D

    1221
    Mathis LabMay 17, 20243d_imagingmicroscopysegmentation+2

    Self-supervised 3D cell segmentation for fluorescence microscopy, pairing WNet3D with Swin-UNetR to segment volumes without annotated training data.

    Imaging
    89Openness
  • LOBSTER

    1657
    Prescient Design +1 otherMay 15, 2024fitness_predictionfoundation_modellanguage_model+5

    Efficient protein language model library from Prescient Design enabling high-quality sequence representations and fitness prediction in 24 GPU hours.

    Protein
    69Openness
  • Microsoft ResearchMay 13, 2024cryo_emdiffusiondrug_discovery+8

    Deep learning framework predicting equilibrium distributions of molecular systems, enabling efficient ensemble generation and conformation sampling.

    Protein
    46Openness
  • EchoCLIP

    51218
    Cedars-Sinai Medical Center +2 othersMay 6, 2024cardiac_ultrasoundcontrastive_learningconvnext+7

    CLIP-style vision-language model for echocardiography, pretrained on echo videos and cardiologist reports for zero-shot cardiac interpretation.

    Imaging
    32Openness
  • ChatNT

    901538
    InstaDeep +1 otherApril 30, 2024gene_expressiongenomicsinstruction_tuning+3

    Conversational agent that answers plain-language questions about DNA, RNA, and protein sequences by coupling a genomics encoder to a language model.

    DNA & GeneLanguage model
    32Openness
  • Med-Gemini

    410
    Google Research +1 otherApril 29, 2024clinical_reasoningelectronic_health_recordsfine_tuning+9

    Family of medical multimodal models built on Gemini, adding uncertainty-guided web search, custom modality encoders, and long-context EHR reasoning.

    Language modelImaging
    8Openness
  • MedDr

    1002846
    Hong Kong University of Science and TechnologyApril 23, 2024foundation_modelhistologyinstruction_tuning+7

    Generalist medical vision-language foundation model with 40B parameters, spanning radiology, pathology, dermatology, retinography, and endoscopy.

    ImagingLanguage model
    69Openness
  • OpenCRISPR-1

    1.2K80
    ProfluentApril 22, 2024de_novo_designdnafoundation_model+5

    AI-designed CRISPR-Cas9 gene editor generated by protein language models trained on 1.2 million CRISPR operons and shown to edit the human genome.

    Protein
    16Openness
  • Nicheformer

    167144945
    Helmholtz Munich +1 otherApril 17, 2024foundation_modelspatial_transcriptomicstranscriptomics+1

    Transformer foundation model pretrained on 110M single-cell and spatial transcriptomics profiles, transferring spatial context to dissociated cells.

    Single-cell
    87Openness
  • Med-MoE

    15889
    Zhejiang University +2 othersApril 16, 2024histologyimage_classificationinstruction_tuning+5

    Lightweight mixture-of-experts medical vision-language model routing visual question answering and image classification to domain-specific experts.

    ImagingLanguage modelPathology
    81Openness
  • M3D

    454172924
    Beijing Academy of Artificial IntelligenceMarch 31, 2024ctimage_text_retrievalinstruction_tuning+9

    Multimodal large language model for 3D medical imaging that handles report generation, visual question answering, and segmentation on CT volumes.

    ImagingLanguage model
    77Openness
  • SelfPAB

    1821
    NTNUMarch 25, 2024foundation_modelrepresentation_learningself_supervised+1

    Transformer encoder self-supervised on 100,000 hours of dual-accelerometer data, used as a frozen feature extractor for human activity recognition.

    Biosignals
    78Openness
  • CONCH

    5181K67.1K
    Mahmood Lab +1 otherMarch 19, 2024contrastive_learningfoundation_modelhistology+3

    Histopathology vision-language foundation model pretrained on 1.17 million image-caption pairs with contrastive and captioning objectives.

    Imaging
    44Openness
  • BrainMass

    2557
    Harbin Institute of Technology (Shenzhen) +1 otherMarch 3, 2024brain_networkdisease_diagnosisfmri+5

    Self-supervised foundation model for functional brain network analysis from resting-state fMRI, pretrained across 30 datasets for disorder diagnosis.

    Biosignals
    18Openness