All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 433–456 of 552 filtered models
UNI
7611.6K60KComputational pathology foundation model (ViT-L/16, DINOv2) pretrained on over 100 million H&E tiles from more than 100,000 whole-slide images.
Pathology46OpennessCONCH
5181K67.1KHistopathology vision-language foundation model pretrained on 1.17 million image-caption pairs with contrastive and captioning objectives.
Imaging44OpennessERNIE-RNA
44431.8KRNA language model that builds base-pairing constraints into self-attention, pretrained on 20.4 million sequences for structure and function tasks.
RNA46OpennessSelf-supervised 3D CT foundation model that extracts general-purpose tumor representations for cancer imaging biomarker discovery and prognosis.
Imaging92OpennessuniGradICON
22871—Foundation model for medical image registration that aligns CT and MRI across anatomies and modalities without per-pair optimization or retraining.
Imaging65OpennessCaduceus
2482232.6KBidirectional, reverse-complement equivariant DNA language models built on Mamba state space models for long-range variant effect prediction.
DNA & Gene86OpennessBrainMass
2557—Self-supervised foundation model for functional brain network analysis from resting-state fMRI, pretrained across 30 datasets for disorder diagnosis.
Biosignals18OpennessVoCo
230113—Hong Kong University of Science and TechnologyFebruary 27, 2024contrastive_learningctfoundation_model+5Self-supervised pretraining framework for 3D medical image encoders that learns anatomy by predicting where a sub-volume sits within a CT scan.
Imaging69OpennessProLLaMA
20795304Protein large language model adapted from LLaMA-2 that unifies sequence generation and superfamily classification in one 7B-parameter framework.
Protein95OpennessRibonanzaNet
137—RNA foundation model trained on chemical-mapping data from millions of sequences, predicting reactivity, secondary structure, and degradation.
RNA74OpennessscGPT
1.6K1.2K—Generative pretrained transformer trained on 33 million human cells for single-cell annotation, batch correction, and perturbation prediction.
Single-cell82OpennessBrainWave (Brant-2)
4731—Foundation model spanning invasive SEEG/iEEG and non-invasive EEG in one backbone, with zero- and few-shot transfer across neurological disorders.
Biosignals10OpennessDNABERT-S
1305324.1KDNA embedding model built on DNABERT-2, using contrastive learning to cluster sequences by species for metagenomic binning without labeled data.
DNA & Gene53OpennessscMulan
626—Generative language model for single-cell transcriptomics with 368M parameters, unifying cell type annotation, batch integration, and cell generation.
Single-cell48OpennessCheXagent
23075981Instruction-tuned vision-language foundation model for chest X-ray interpretation, with 8 billion parameters spanning eight clinical task types.
ImagingLanguage model32OpennessMedSAM
4.4K1.5K1.8KPromptable foundation model for universal medical image segmentation, fine-tuned from SAM on 1.57M image-mask pairs across 10 imaging modalities.
Imaging82OpennessProteinINR
9910—Multimodal protein pre-training framework jointly learning sequence, 3D structure, and surface representations via implicit neural representations.
Protein21OpennessRNA-MSM
711091.3KRNA language model trained on multiple sequence alignments of Rfam families, predicting secondary structure and solvent accessibility from homology.
RNA61OpennessxTrimoPGLM
2153—Unified 100-billion-parameter protein language model combining autoencoding and autoregressive objectives for protein understanding and generation.
Protein30OpennessRudolfV
—74—Self-supervised pathology foundation model with a 300M-parameter vision transformer tile encoder, trained on a multi-stain whole-slide image corpus.
Pathology9OpennessCaLM
5445—Codon-level BERT model that captures genomic signals invisible to amino acid models, outperforming billion-parameter PLMs with just 86M parameters.
Protein66Openness