All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 433456 of 552 filtered models

  • UNI

    7611.6K60K
    Mahmood LabMarch 22, 2024dinofoundation_modelhistology+2

    Computational pathology foundation model (ViT-L/16, DINOv2) pretrained on over 100 million H&E tiles from more than 100,000 whole-slide images.

    Pathology
    46Openness
  • CONCH

    5181K67.1K
    Mahmood Lab +1 otherMarch 19, 2024contrastive_learningfoundation_modelhistology+3

    Histopathology vision-language foundation model pretrained on 1.17 million image-caption pairs with contrastive and captioning objectives.

    Imaging
    44Openness
  • ERNIE-RNA

    44431.8K
    Tsinghua UniversityMarch 17, 2024foundation_modellanguage_modelsecondary_structure_prediction+1

    RNA language model that builds base-pairing constraints into self-attention, pretrained on 20.4 million sequences for structure and function tasks.

    RNA
    46Openness
  • Harvard Medical School +6 othersMarch 15, 20243d_cnnbiomarker_discoverycontrastive_learning+9

    Self-supervised 3D CT foundation model that extracts general-purpose tumor representations for cancer imaging biomarker discovery and prognosis.

    Imaging
    92Openness
  • uniGradICON

    22871
    University of North Carolina at Chapel HillMarch 9, 2024cnnctfoundation_model+3

    Foundation model for medical image registration that aligns CT and MRI across anatomies and modalities without per-pair optimization or retraining.

    Imaging
    65Openness
  • Caduceus

    2482232.6K
    Kuleshov LabMarch 5, 2024foundation_modelgenomicslanguage_model+2

    Bidirectional, reverse-complement equivariant DNA language models built on Mamba state space models for long-range variant effect prediction.

    DNA & Gene
    86Openness
  • BrainMass

    2557
    Harbin Institute of Technology (Shenzhen) +1 otherMarch 3, 2024brain_networkdisease_diagnosisfmri+5

    Self-supervised foundation model for functional brain network analysis from resting-state fMRI, pretrained across 30 datasets for disorder diagnosis.

    Biosignals
    18Openness
  • RiNALMo

    169135
    LBCB SciFebruary 29, 2024foundation_modellanguage_modelstructure_prediction

    RNA language model with 650M parameters pretrained on 36 million non-coding RNA sequences, generalizing structure prediction to unseen RNA families.

    RNA
    72Openness
  • VoCo

    230113
    Hong Kong University of Science and TechnologyFebruary 27, 2024contrastive_learningctfoundation_model+5

    Self-supervised pretraining framework for 3D medical image encoders that learns anatomy by predicting where a sub-volume sits within a CT scan.

    Imaging
    69Openness
  • ProLLaMA

    20795304
    PKU-YuanGroupFebruary 26, 2024foundation_modellanguage_modelllama+1

    Protein large language model adapted from LLaMA-2 that unifies sequence generation and superfamily classification in one 7B-parameter framework.

    Protein
    95Openness
  • Stanford UniversityFebruary 26, 2024chemical_mappingcnnfoundation_model+5

    RNA foundation model trained on chemical-mapping data from millions of sequences, predicting reactivity, secondary structure, and degradation.

    RNA
    74Openness
  • scGPT

    1.6K1.2K
    Bowang LabFebruary 26, 2024foundation_modelgene_expressionperturbation+1

    Generative pretrained transformer trained on 33 million human cells for single-cell annotation, batch correction, and perturbation prediction.

    Single-cell
    82Openness
  • Zhejiang UniversityFebruary 15, 2024disease_diagnosiseegfew_shot+6

    Foundation model spanning invasive SEEG/iEEG and non-invasive EEG in one backbone, with zero- and few-shot transfer across neurological disorders.

    Biosignals
    10Openness
  • ZJUNlpFebruary 13, 2024foundation_modelnatural_language

    Conversational T5-based framework that turns scRNA-seq data into cell sentences for cell type annotation and drug sensitivity prediction.

    Single-cellLanguage model
    19Openness
  • DNABERT-S

    1305324.1K
    MAGICS LabFebruary 13, 2024contrastive_learningdnaembeddings+3

    DNA embedding model built on DNABERT-2, using contrastive learning to cluster sequences by species for metagenomic binning without labeled data.

    DNA & Gene
    53Openness
  • scMulan

    626
    Tsinghua UniversityJanuary 29, 2024foundation_modelgenerativelanguage_model+1

    Generative language model for single-cell transcriptomics with 368M parameters, unifying cell type annotation, batch integration, and cell generation.

    Single-cell
    48Openness
  • CheXagent

    23075981
    Stanford UniversityJanuary 22, 2024chest_x_rayfoundation_modelimage_classification+7

    Instruction-tuned vision-language foundation model for chest X-ray interpretation, with 8 billion parameters spanning eight clinical task types.

    ImagingLanguage model
    32Openness
  • MedSAM

    4.4K1.5K1.8K
    Bowang Lab +6 othersJanuary 22, 2024foundation_modelhistologymedical_image_segmentation+4

    Promptable foundation model for universal medical image segmentation, fine-tuned from SAM on 1.57M image-mask pairs across 10 imaging modalities.

    Imaging
    82Openness
  • ProteinINR

    9910
    Kakao BrainJanuary 16, 2024foundation_modelrepresentation_learningstructure_prediction

    Multimodal protein pre-training framework jointly learning sequence, 3D structure, and surface representations via implicit neural representations.

    Protein
    21Openness
  • RNA-MSM

    711091.3K
    Peking University +1 otherJanuary 11, 2024foundation_modellanguage_modelstructure_prediction

    RNA language model trained on multiple sequence alignments of Rfam families, predicting secondary structure and solvent accessibility from homology.

    RNA
    61Openness
  • xTrimoPGLM

    2153
    BioMap +1 otherJanuary 11, 2024foundation_modelprotein_designstructure_prediction+1

    Unified 100-billion-parameter protein language model combining autoencoding and autoregressive objectives for protein understanding and generation.

    Protein
    30Openness
  • EEGFormer

    64
    Microsoft +1 otherJanuary 11, 2024anomaly_detectioneegfoundation_model+5

    EEG foundation model pretrained with vector-quantized self-supervision, yielding interpretable discrete codes that transfer to seizure detection.

    Biosignals
    22Openness
  • RudolfV

    74
    Aignostics +7 othersJanuary 8, 2024biomarker_predictionfeature_extractionfoundation_model+3

    Self-supervised pathology foundation model with a 300M-parameter vision transformer tile encoder, trained on a multi-stain whole-slide image corpus.

    Pathology
    9Openness
  • CaLM

    5445
    Oxford Protein Informatics Group (OPIG)January 1, 2024bertcodondna+3

    Codon-level BERT model that captures genomic signals invisible to amino acid models, outperforming billion-parameter PLMs with just 86M parameters.

    Protein
    66Openness