Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 1–24 of 358 filtered models
Pocket-conditioned 3D ligand generator that steers flow matching with LLM-written chemical priors, for de novo design and scaffold hopping.
Fragment-protein interaction model trained on cellular chemoproteomics, pairing ESM-2 residue embeddings with bilinear attention over ligand atoms.
Multi-task cellular foundation model predicting drug sensitivity, perturbation expression and drug-protein binding from one pretrained checkpoint.
Sequence-only dual-encoder contrastive model that ranks whole molecule libraries against a protein target without 3D structures or per-pair scoring.
NMR foundation model that turns 1D 1H spectra into reusable embeddings, with a shared encoder serving denoising, peak detection, and retrieval.
Drug- and dose-conditioned latent transition predictor pretrained on the Tahoe-100M perturbation atlas and transferred frozen to tumor RNA-seq.
Protein-ligand co-folding model on the OpenFold3 architecture, trained on PDB structures through June 2025 with inference-time chemical steering.
Long-context co-folding model for protein, nucleic-acid and ligand assemblies, folding systems up to 16,384 residues on a single GPU.
Cross-modal continued pretraining on curated mass-spectrometry proteomes lifts a 70M single-cell model past RNA-only checkpoints far larger.
World model that simulates a human cell as one persistent state, propagating drug and gene perturbations from DNA through to whole-cell morphology.
Olfactory receptor-odorant interaction prediction from sequence and SMILES, pairing protein and chemical language models through cross-attention.
Molecular glue degrader activity prediction from SMILES and protein sequence, with two-stage cross-attention that follows E3-then-substrate binding.
Infrared spectroscopy foundation model pretrained on 60 million simulated spectra, then adapted to real FTIR measurements of molecules and mixtures.
Single-cell perturbation response prediction by conditional latent diffusion, trained on the Tahoe-100M atlas of 100 million drug-treated cells.
Molecular property prediction model pretrained jointly on SMILES strings and 2D graphs, fusing the two views through bidirectional cross-attention.
Antisense oligonucleotide activity prediction from sequence, position-specific chemistry, dose, and cell context. Spearman 0.5970 on ASO Atlas.
Tandem mass spectrum prediction that builds explicit fragmentation pathways, mapping unknown spectra onto 800 million predicted PubChem spectra.
Cryo-EM density enhancement for protein-ligand binding sites, sharpening weak ligand maps with a 3D Swin-Conv UNet trained on 6,511 complexes.
Protein-ligand binding affinity scoring model for virtual screening that generalizes to novel pockets and ligands under strict train-test splits.