All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 19 of 9 filtered models

  • FLASH

    Hunter College, CUNYMay 11, 2026drug_discoverydrug_drug_interactiondrug_repurposing+7

    A signed heterogeneous graph foundation model pretrained on the SIGMA-KG knowledge graph for zero-shot drug mode-of-action, clinical response, and drug-drug interaction prediction.

    Small molecule
  • CoMole

    University of Notre DameMay 1, 2026de_novo_designdiffusiondrug_discovery+7

    A motif-aware graph diffusion transformer for controllable molecular generation that transfers to unseen properties by learning only lightweight task embeddings with the generator frozen.

    Small molecule
  • TerraBind

    Terray TherapeuticsFebruary 12, 2026binding_affinitydrug_discoveryfoundation_model+3

    Protein-ligand foundation model that maps coarse-grained structural representations directly to binding affinity, running ~26x faster than Boltz-2.

    ProteinSmall molecule
  • NatureLM

    836
    Microsoft Research AI for ScienceFebruary 11, 2025drug_discoveryfoundation_modelmaterials_science+2

    Unified science foundation model from Microsoft Research treating molecules, proteins, RNA, DNA, and materials as a shared sequence language for cross-domain generation.

    Language modelSmall moleculeProtein
  • MAMMAL

    10782.3K
    IBM ResearchOctober 28, 2024cell_type_annotationdrug_discoveryfoundation_model+7

    Multi-modal, multi-task biological foundation model trained on 2 billion samples spanning proteins, small molecules, and single-cell gene expression.

    ProteinSmall moleculeSingle-cell
  • IBM ResearchOctober 25, 2024drug_discoveryfoundation_modelgraph_neural_network+5

    Multi-view molecular foundation model that integrates graph, image, and text representations via late fusion for molecular property and target prediction.

    Small molecule
  • BioT5+

    1264.6K
    Microsoft Research AsiaAugust 1, 2024drug_discoveryfoundation_modelsmall_molecule

    An enhanced T5-based encoder-decoder that unifies molecule, protein, and text understanding via IUPAC integration and multi-task instruction tuning.

    Language modelSmall moleculeProtein
  • BioT5

    126
    Renmin University of ChinaOctober 11, 2023drug_discoveryfoundation_modellanguage_model+1

    Pre-training framework bridging molecules, proteins, and natural language using T5 with SELFIES representations for cross-modal biological understanding.

    Language modelSmall moleculeProtein
  • MoLFormer-XL

    400539560.1K
    IBM ResearchOctober 3, 2022drug_discoveryfoundation_modellanguage_model+4

    Large-scale chemical language model trained on 1.1 billion SMILES strings using linear attention transformers for molecular property prediction.

    Small molecule