All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 19 of 9 filtered models

  • VelocityFM

    University of Colombo School of Computing +1 otherJune 7, 2026conformational_samplingflow_matchinggenerative+4

    Generative protein-dynamics model that predicts short molecular dynamics trajectories with rectified flow matching over residue frames and torsions.

    Protein
    21Openness
  • ENSEMBITS

    7
    Vanderbilt UniversityMay 13, 2026function_predictionmolecular_dynamicsprotein_dynamics+5

    Protein conformational ensemble tokenizer that learns a discrete alphabet of states from molecular dynamics, reusable as a frozen feature layer.

    Protein
    66Openness
  • University of KentuckyMay 4, 2026contrastive_learningintrinsic_disorder_predictionmolecular_dynamics+6

    Protein language model aligning ESM sequence embeddings with molecular dynamics trajectories for zero-shot mutation effect and stability prediction.

    Protein
    10Openness
  • ProAR

    Peking UniversityMarch 21, 2026autoregressiveconformational_samplinggenerative+4

    Autoregressive generative model for protein molecular dynamics that emits flexible-length trajectories frame by frame with anti-drifting sampling.

    Protein
    19Openness
  • BioKinema

    3
    International Digital Economy AcademyFebruary 15, 2026conformational_samplingdiffusiondrug_discovery+5

    Diffusion model that generates continuous-time, all-atom biomolecular trajectories, reproducing conformational kinetics far more cheaply than MD.

    ProteinSmall molecule
    13Openness
  • Shandong UniversityJanuary 16, 2026diffusionfolding_pathway_simulationgenerative+5

    Evolution-guided diffusion model that generates temporal protein folding pathways, from unfolded chain to native state, rather than static structures.

    Protein
    64Openness
  • TEMPO

    5
    Chinese University of Hong Kong, Shenzhen +1 otherNovember 7, 2025autoregressiveconformational_ensemble_generationgenerative+4

    Protein dynamics model that samples conformational ensembles autoregressively at slow and fast timescales, generalizing zero-shot to unseen proteins.

    Protein
    25Openness
  • BioEmu-1

    855340
    MicrosoftDecember 5, 2024conformational_ensemblefoundation_modelgenerative+3

    Generative model that emulates protein equilibrium ensembles, sampling cryptic pockets and unfolded states far faster than molecular dynamics.

    Protein
    71Openness
  • Columbia UniversityOctober 11, 2024language_modelprotein_dynamicsrepresentation_learning+4

    Protein language models trained on biophysical dynamics from MD simulations and normal-mode analysis; ESMDance builds on ESM2 for variant effects.

    Protein
    84Openness