All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 110 of 10 filtered models

  • VelocityFM

    University of Colombo School of Computing +1 otherJune 7, 2026conformational_samplingflow_matchinggenerative+4

    A generative protein-dynamics model that predicts short-horizon MD trajectories using rectified flow matching in velocity space over residue frames and torsions.

    Protein
    21Openness
  • ENSEMBITS

    7
    Vanderbilt UniversityMay 13, 2026function_predictionmolecular_dynamicsprotein_dynamics+5

    A residual VQ-VAE tokenizer that learns a discrete alphabet of protein conformational ensembles from molecular dynamics data, usable as a frozen representation layer for downstream tasks.

    Protein
    66Openness
  • University of KentuckyMay 4, 2026contrastive_learningintrinsic_disorder_predictionmolecular_dynamics+6

    A protein language model that aligns ESM sequence embeddings with molecular-dynamics trajectory embeddings via contrastive learning for zero-shot mutation-effect prediction.

    Protein
    10Openness
  • ProAR

    Peking UniversityMarch 21, 2026autoregressiveconformational_samplinggenerative+4

    A probabilistic autoregressive model for protein molecular-dynamics trajectories that generates flexible-length paths frame-by-frame with an anti-drifting sampling strategy.

    Protein
    19Openness
  • ATMOS

    1
    MilaMarch 18, 2026conformation_generationdiffusionfoundation_model+5

    A generative foundation model for biomolecular dynamics that produces atom-level MD-style trajectories for protein monomers and protein-ligand complexes.

    Protein
    11Openness
  • University of CambridgeFebruary 23, 2026drug_discoveryequivariant_neural_networkfoundation_model+5

    A polarizable electrostatic machine-learning interatomic potential extending MACE with long-range induction, trained on 100M OMol25 DFT calculations.

    Small moleculeProtein
    19Openness
  • BioKinema

    2
    International Digital Economy AcademyFebruary 15, 2026conformational_samplingdiffusiondrug_discovery+5

    A physically grounded diffusion model that generates continuous-time, all-atom biomolecular dynamics trajectories at a fraction of the cost of molecular dynamics simulation.

    ProteinSmall molecule
    13Openness
  • IQuestLabFebruary 13, 2026curriculum_learningenergy_predictionequivariant_transformer+3

    A universal all-atom machine-learning force field foundation model with ab initio-level accuracy on solvated biomolecular systems up to ~1,500 atoms.

    Small moleculeProtein
    81Openness
  • Helmholtz Munich +2 othersJanuary 22, 2026language_modelmolecular_dynamicsproteomics+6

    A LoRA adapter on ProstT5 that predicts per-residue probability distributions over Foldseek 3Di tokens, capturing sequence-encoded conformational flexibility from MD trajectories.

    Protein
    93Openness
  • BioEmu-1

    831293
    MicrosoftDecember 5, 2024conformational_ensemblefoundation_modelgenerative+3

    Generative deep learning model from Microsoft Research that emulates protein equilibrium ensembles at 100,000x the speed of molecular dynamics simulation.

    Protein
    71Openness