All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 17 of 7 filtered models

  • Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Seventh-place CZII CryoET Kaggle solution; an ensemble of three heatmap-predicting 3D segmentation models using ResNet50d and EfficientNetV2-M backbones for particle picking.

    Imaging
    95Openness
  • TopCUP

    2
    Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    First-place solution from the CZII CryoET Object Identification Kaggle competition; an ensemble of 3D EfficientNet-encoder U-Nets for multi-class protein particle picking.

    Imaging
    96Openness
  • BPD

    1
    Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Fifth-place solution from the CZII CryoET Kaggle competition; an ensemble of four lightweight 3D U-Nets for protein particle localization in cryo-ET tomograms.

    Imaging
    67Openness
  • Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Eighth-place CZII CryoET Kaggle solution; a weighted model soup of tiny, medium, and large 3D U-Nets pretrained on simulated data and fine-tuned on experimental cryo-ET tomograms.

    Imaging
    86Openness
  • Octopi

    9
    Chan Zuckerberg InitiativeJanuary 1, 2025cnncryo_etparticle_picking+3

    A deep learning framework for multi-class protein particle picking in cryo-ET tomograms using a 3D U-Net with automated architecture search via Bayesian optimization.

    Imaging
    81Openness
  • CryoLens

    16
    Chan Zuckerberg InitiativeJanuary 1, 2025cnncryo_etgenerative+6

    A variational autoencoder for interpretable 3D reconstruction and representation learning of protein subtomograms from cryo-ET data, trained on 5.8 million synthetic particles.

    Imaging
    74Openness
  • CryoSAM

    1566
    Xu LabJuly 9, 2024cryo_etfoundation_modelparticle_picking+3

    Training-free cryo-ET tomogram segmentation that adapts SAM and DINOv2 for 3D volumetric data, enabling full tomogram segmentation from a single user prompt.

    Imaging
    82Openness