All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 111 of 11 filtered models

  • Helmholtz MunichJune 22, 2026cell_biologycontrastive_learningfluorescence_microscopy+6

    Self-supervised 3D masked autoencoder for volumetric fluorescence microscopy, aligned to ESM2 embeddings to predict protein localization.

    ImagingSingle-cell
    71Openness
  • Weizmann Institute of Science +1 otherOctober 19, 2025gut_microbiomemasked_autoencodermetagenomics+2

    Self-supervised models that embed gut metagenomic abundance profiles for robust phenotype prediction in data-limited, cross-cohort settings.

    DNA & Gene
    23Openness
  • CortexMAE

    532107
    Sophont +1 otherOctober 15, 2025brain_state_decodingfmrifoundation_model+5

    fMRI foundation model trained on cortical flat-map videos with masked autoencoding, showing power-law scaling on brain activity reconstruction.

    Biosignals
    68Openness
  • EyeCLIP

    8765
    The Hong Kong Polytechnic University +5 othersJune 21, 2025clipcontrastive_learningcross_modal_retrieval+11

    CLIP-based vision-language foundation model for eye imaging, enabling zero-shot disease detection and cross-modal retrieval across 11 modalities.

    ImagingLanguage model
    15Openness
  • German Cancer Research Center (DKFZ) +5 othersOctober 30, 2024brain_mricnnfoundation_model+7

    Masked-autoencoder foundation model that pre-trains a 3D Residual Encoder U-Net on roughly 39,000 brain MRIs for volumetric image segmentation.

    Imaging
    45Openness
  • Eko HealthOctober 11, 2024disease_detectionecgfoundation_model+5

    Masked-autoencoder foundation model pretrained on digital-stethoscope heart sounds and single-lead ECG for cardiovascular disease detection.

    Biosignals
    22Openness
  • CREMA

    7
    Medical AI Co., Ltd.June 26, 2024contrastive_learningecg_diagnosticselectrocardiography+5

    Self-supervised foundation model for 12-lead ECG, pairing masked autoencoder pretraining with contrastive regularization for robust diagnostics.

    Biosignals
    10Openness
  • EyeFound

    43
    The Hong Kong Polytechnic University +3 othersMay 18, 2024disease_diagnosisfoundation_modelmasked_autoencoder+7

    Ophthalmic imaging foundation model pretrained on 2.78M images across 11 modalities for diagnosis, prognosis, and visual question answering.

    Imaging
    4Openness
  • MMM

    11191
    Microsoft +1 otherDecember 10, 2023brain_computer_interfaceeegemotion_recognition+5

    EEG pretraining framework mapping any electrode montage to a unified topology for topology-agnostic representations that transfer across datasets.

    Biosignals
    60Openness
  • RETFound

    660938105
    University College London +1 otherSeptember 13, 2023disease_detectionfoundation_modelimage_classification+7

    Self-supervised foundation model for retinal imaging, pretrained on 1.6 million unlabelled fundus and OCT scans to detect ocular and systemic disease.

    ImagingPathology
    30Openness
  • BrainLM

    18130
    Yale University +2 othersSeptember 12, 2023brain_state_forecastingclinical_variable_predictionfmri+7

    fMRI foundation model pretrained with masked autoencoding on roughly 6,700 hours of recordings for clinical prediction and network discovery.

    Biosignals
    25Openness