All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 115 of 15 filtered models

  • Omnii

    Radical NumericsJune 15, 2026convolutionaldnafoundation_model+6

    Genomic language model from Radical Numerics with a 2 Mbp context window, built for zero-shot variant effect prediction and sequence design.

    DNA & Gene
    5Openness
  • RDiffusion

    Zhejiang University +6 othersJune 13, 2026de_novo_designdiffusionfoundation_model+5

    Diffusion-based generative RNA model for de novo sequence design, conditioned on function, RNA family, structure, or binding proteins.

    RNA
    5Openness
  • RedNet

    4
    Toyota Technological Institute at ChicagoMay 13, 2026generativegraph_neural_networkinverse_folding+3

    Multiscale graph neural network for fixed-backbone protein binder sequence design with a contrastive decoding algorithm to improve target selectivity.

    Protein
    83Openness
  • GoForth

    University of California, BerkeleyMay 8, 2026encoder_decodergenerativeinverse_folding+5

    RNA inverse-folding language model that designs nucleotide sequences satisfying a target secondary structure, fixed bases, and coding constraints.

    RNA
    63Openness
  • Stanford UniversityApril 24, 2026bertde_novo_designdiffusion+5

    110M-parameter RNA language model that designs sequences from secondary structure, motif, and Gene Ontology constraints via discrete diffusion.

    RNA
    48Openness
  • University of VirginiaApril 19, 2026diffusiongenerativegraph_neural_network+5

    RNA inverse folding framework pairing a graph neural network predictor with a diffusion model, designing sequences from self-contained RNA units.

    RNA
    17Openness
  • LigandMPNN

    608233
    Institute for Protein DesignMarch 1, 2025enzyme_designgraph_neural_networkligand_binding+2

    Protein sequence design model that represents small molecules, nucleotides, and metals at atomic resolution, enabling ligand-aware enzyme design.

    Protein
    66Openness
  • AIDO.DNA

    1681783
    genbio.aiDecember 1, 2024bertdnafoundation_model+7

    DNA foundation model scaling an encoder-only transformer to 7 billion parameters for variant effect prediction, gene expression, and sequence design.

    DNA & Gene
    27Openness
  • AIDO.RNA

    168261.1K
    genbio.aiNovember 28, 2024bertfoundation_modellanguage_model+7

    RNA foundation model with 1.6 billion parameters, pretrained on 42 million non-coding RNA sequences for structure prediction and RNA sequence design.

    RNA
    18Openness
  • Evo

    1.5K2501.8K
    Arc InstituteNovember 15, 2024dnafoundation_modelgenomics+2

    Genomic foundation model with 7B parameters that models prokaryotic DNA, RNA, and protein at single-nucleotide resolution over a 131k-token context.

    DNA & Gene
    70Openness
  • BC-Design

    213
    Gerstein Lab +1 otherNovember 3, 2024antibodyantibody_designenzyme+7

    Biochemistry-aware inverse folding model that augments backbone geometry with physicochemical point clouds, reaching ~90% sequence recovery on CATH.

    Protein
    75Openness
  • 5' UTR-LM

    95122113
    Princeton UniversityApril 1, 2024foundation_modelmrnasequence_design+1

    Transformer language model for 5' UTR sequences that predicts mRNA translation efficiency, ribosome loading, and protein expression levels.

    RNA
    60Openness
  • RfamGen

    4260
    Kyoto University +1 otherJanuary 1, 2024foundation_modelsequence_designvariational_autoencoder

    Generative RNA design model that samples family sequences from a VAE latent space constrained by Rfam covariance models and consensus structure.

    RNA
    10Openness
  • Stanford UniversityApril 24, 2023antibodydirected_evolutionfoundation_model+1

    Zero-shot antibody affinity maturation using ESM pseudolikelihood scoring. Improves binding up to 160-fold with no antigen-specific training data.

    Protein
    42Openness
  • ProteinMPNN

    1.8K1.9K
    Institute for Protein DesignSeptember 15, 2022graph_neural_networkinverse_foldingprotein_design+1

    Message passing neural network for fixed-backbone protein sequence design. Achieves 52.4% native sequence recovery, far surpassing Rosetta's 32.9%.

    Protein
    85Openness