All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 1–15 of 15 filtered models
Omnii
———Genomic language model from Radical Numerics with a 2 Mbp context window, built for zero-shot variant effect prediction and sequence design.
DNA & Gene5OpennessRDiffusion
———Diffusion-based generative RNA model for de novo sequence design, conditioned on function, RNA family, structure, or binding proteins.
RNA5OpennessRedNet
4——Toyota Technological Institute at ChicagoMay 13, 2026generativegraph_neural_networkinverse_folding+3Multiscale graph neural network for fixed-backbone protein binder sequence design with a contrastive decoding algorithm to improve target selectivity.
Protein83OpennessGoForth
———RNA inverse-folding language model that designs nucleotide sequences satisfying a target secondary structure, fixed bases, and coding constraints.
RNA63Openness110M-parameter RNA language model that designs sequences from secondary structure, motif, and Gene Ontology constraints via discrete diffusion.
RNA48OpennessRNA inverse folding framework pairing a graph neural network predictor with a diffusion model, designing sequences from self-contained RNA units.
RNA17OpennessLigandMPNN
608233—Protein sequence design model that represents small molecules, nucleotides, and metals at atomic resolution, enabling ligand-aware enzyme design.
Protein66OpennessEvo
1.5K2501.8KGenomic foundation model with 7B parameters that models prokaryotic DNA, RNA, and protein at single-nucleotide resolution over a 131k-token context.
DNA & Gene70OpennessBC-Design
213—Biochemistry-aware inverse folding model that augments backbone geometry with physicochemical point clouds, reaching ~90% sequence recovery on CATH.
Protein75Openness5' UTR-LM
95122113Transformer language model for 5' UTR sequences that predicts mRNA translation efficiency, ribosome loading, and protein expression levels.
RNA60OpennessRfamGen
4260—Generative RNA design model that samples family sequences from a VAE latent space constrained by Rfam covariance models and consensus structure.
RNA10OpennessZero-shot antibody affinity maturation using ESM pseudolikelihood scoring. Improves binding up to 160-fold with no antigen-specific training data.
Protein42OpennessProteinMPNN
1.8K1.9K—Message passing neural network for fixed-backbone protein sequence design. Achieves 52.4% native sequence recovery, far surpassing Rosetta's 32.9%.
Protein85Openness