All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 1–16 of 16 filtered models
TEDlm
———Protein language model pretrained on structural domain segments, encoding fold and contact signals for remote-homology detection from sequence alone.
Protein20OpennessProLoc
———Text-guided localization model that grounds natural-language functional descriptions to specific residue regions of a protein sequence.
ProteinLanguage model10OpennessProtein function prediction model that fuses sequence, structure, text, and interaction embeddings with learned gating to assign Gene Ontology terms.
Protein84OpennessBioReason-Pro
1229—Multimodal reasoning LLM for protein function prediction, fusing protein language model embeddings to emit interpretable GO-term reasoning traces.
ProteinLanguage model58OpennessGO-GPT
122939Protein function prediction model that autoregressively generates Gene Ontology terms from amino acid sequence instead of classifying fixed labels.
Protein55OpennessBioBridge
—2—Connects a frozen protein language model to a general LLM via a cross-modal projector, adding protein reasoning without catastrophic forgetting.
Language modelProtein13OpennessFoldVision
———Structure-based protein encoder that voxelizes every heavy atom into a 3D grid, learning orientation-robust representations for protein function.
Protein20OpennessSciReasoner
90—44Multimodal scientific foundation model unifying protein, DNA/RNA, and small-molecule structure in one token vocabulary for cross-domain reasoning.
ProteinDNA & GeneSmall molecule66OpennessEvolla
69239Multimodal 80B-parameter protein-language model that answers natural language questions about protein function from sequence and structure.
Protein67OpennessSeqProFT
24—LoRA fine-tuning framework for ESM-2 with multi-head attention pooling and contact map enhancement for sequence-only protein property prediction.
Protein13OpennessProt2Token
3810—Multi-task protein framework recasting function, binding site, and structure prediction as autoregressive next-token prediction over ESM2 embeddings.
Protein13OpennessMULAN
251047Multimodal protein language model extending ESM-2 and SaProt with a Structure Adapter over residue torsion angles for protein function prediction.
Protein83OpennessgLM
9193—Genomic language model trained on metagenomic scaffolds that learns protein co-regulation and function by modeling gene context and operon structure.
DNA & Gene30OpennessDeepGO
61106—Protein function prediction models that assign Gene Ontology terms using language model embeddings and neuro-symbolic reasoning over GO axioms.
Protein63OpennessSaProt
61334839.2KStructure-aware protein language model pairing amino acid tokens with Foldseek 3Di structural states, outperforming ESM-2 across 10 downstream tasks.
Protein91OpennessESM-GearNet
11555—Joint sequence-structure protein representation framework that fuses ESM-2 language model embeddings with GearNet geometric graph neural networks.
Protein30Openness