All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 124 of 34 filtered models

  • Nesso-1

    119
    Recursion PharmaceuticalsJuly 20, 2026binding_affinity_predictiondrug_discoverymulti_task+3

    Protein-ligand binding affinity prediction from sequence and SMILES, without MSAs. Coarse-grained cofolding runs over 10x faster than Boltz-2.

    ProteinSmall molecule
    72Openness
  • RNARL

    Shanghai Jiao Tong University +2 othersJune 13, 2026codoncodon_optimizationgenerative+6

    Reinforcement-learning generative framework for multi-objective RNA codon optimization that generalizes across six species and five RNA types.

    RNA
    4Openness
  • Promera

    83
    MIT +1 otherJune 10, 2026antibodybinder_designdiffusion+5

    Unified all-atom generative model for biomolecular structure prediction, binder filtering, and controllable protein and nanobody design.

    Protein
    61Openness
  • ReCLIP

    University of Chicago +2 othersJune 4, 2026multi_taskprotein_protein_interaction_predictionproteomics+4

    Transformer that predicts protein-protein interactions at residue resolution, spanning mutations, PTMs, peptide-MHC binding, and disease variants.

    Protein
    22Openness
  • University of Texas at Austin +1 otherApril 17, 2026bertdrug_discoveryfoundation_model+7

    Chemical language models pretrained on SMILES for therapeutic peptides, natively representing non-canonical residues, cyclization, and conjugation.

    Small moleculeProtein
    79Openness
  • EnzyGen2

    30
    Carnegie Mellon UniversityMarch 31, 2026de_novo_designenzyme_designfoundation_model+5

    Protein foundation model for de novo enzyme design that co-designs sequence and 3D structure under small-molecule ligand guidance, at 730M parameters.

    ProteinSmall molecule
    89Openness
  • HERCULES

    Italian Institute of TechnologyMarch 17, 2026multi_taskproteomicsrna_binding_prediction+4

    Protein language model that classifies RNA-binding proteins, localizes RNA-binding domains, and scores mutation effects at single-residue resolution.

    Protein
    44Openness
  • University of Texas at Arlington +1 otherMarch 13, 2026gangenerativehistology+4

    Virtual staining model that generates four IHC markers, HER2, Ki67, ER, and PR, from H&E using a generator conditioned on a frozen UNI encoder.

    Pathology
    17Openness
  • Pengcheng Laboratory +2 othersMarch 13, 2026chain_of_thoughtcheminformaticsdrug_discovery+6

    Molecular reasoning model built on DeepSeek-7B, using chain-of-thought and reinforcement learning for property prediction, generation, and reactions.

    Small moleculeLanguage model
    21Openness
  • Liquid AI +1 otherMarch 3, 2026admet_predictiondrug_discoverydrug_target_activity_prediction+6

    Small-molecule drug discovery foundation model covering ADMET, retrosynthesis, drug-target activity, and molecular optimization in a 2.6B checkpoint.

    Small moleculeLanguage model
    7Openness
  • MultiPUFFIN

    NTNU +2 othersMarch 1, 2026drug_discoveryfoundation_modelgraph_neural_network+6

    Multimodal foundation model pretrained on ~500K unlabeled PubChem molecules that jointly predicts nine thermophysical properties of small molecules.

    Small molecule
    10Openness
  • ChIANet

    Central South UniversityFebruary 25, 20263d_genomechromatinchromatin_contact_prediction+4

    Multimodal deep learning model that predicts protein-mediated chromatin contact maps and loops de novo from protein-binding profiles and sequence.

    DNA & Gene
    10Openness
  • MAGNET

    Huazhong University of Science and TechnologyDecember 25, 2025denoisingfluorescence_microscopyfoundation_model+7

    Microscopy image restoration foundation model unifying 8 tasks across 5 modalities and 2D/3D data, with zero-shot inference on unseen systems.

    Imaging
    7Openness
  • OMTRA

    68
    University of Pittsburgh +1 otherDecember 4, 2025conformer_generationde_novo_designdrug_discovery+8

    Structure-based drug design model that unifies de novo generation, docking, conformer generation, and pharmacophore conditioning via flow matching.

    Small moleculeProtein
    72Openness
  • Tongji University +1 otherNovember 28, 2025cell_type_annotationfoundation_modelgene_expression+6

    Single-cell foundation model adapting LLaMA-3.1-8B with LoRA, recasting transcriptomes and protein interaction networks as natural-language Q&A pairs.

    Single-cellRNA
    55Openness
  • SHEST

    1
    Samsung Advanced Institute for Health Sciences and Technology +2 othersNovember 19, 2025cell_type_annotationgene_expressionhistology+5

    Histopathology model that predicts single-cell type composition and reconstructs spatial gene expression from H&E slides, with no molecular assay.

    PathologySpatial omics
    16Openness
  • Uni-Hema

    1
    Information Technology University of the Punjab +1 otherNovember 18, 2025classificationcnnfoundation_model+8

    Digital hematopathology foundation model unifying blood-cell detection, classification, segmentation, and visual question answering.

    Pathology
    8Openness
  • UniLingo3DMol

    StoneWiseNovember 14, 2025de_novo_designdrug_discoverygenerative+5

    Pretrained language model for 3D molecule generation in protein pockets, unifying de novo and fragment-based drug design in one multi-task framework.

    Small molecule
    8Openness
  • ProSiteHunter

    Zhejiang University of TechnologyOctober 22, 2025antibodybinding_site_predictionmulti_task+3

    Sequence-based binding site predictor spanning protein-DNA, protein-RNA, protein-protein, and antibody-antigen interfaces via a fine-tuned ProtT5.

    Protein
    23Openness
  • University of North Carolina at Chapel HillOctober 21, 2025behavior_predictionbrain_connectomedisease_diagnosis+6

    fMRI foundation model of the human brain connectome: 1.2B parameters and brain-environment interaction tokens for behavior and disease prediction.

    Biosignals
    26Openness
  • Shanghai Jiao Tong UniversityOctober 1, 2025brain_age_predictionbrain_mridensenet+8

    Brain MRI foundation model pairing DenseNet and Vision Transformer backbones with mixture of experts for disease diagnosis and brain age prediction.

    Imaging
    8Openness
  • BrainFM

    208
    Johns Hopkins University +4 othersAugust 30, 2025foundation_modelimage_synthesismulti_task+4

    Modality-agnostic foundation model for human brain imaging that runs five core neuroimaging tasks across uncalibrated CT and MRI without retraining.

    Imaging
    75Openness
  • Rensselaer Polytechnic Institute +2 othersFebruary 11, 2025chest_ctdisease_classificationfoundation_model+7

    865M-parameter multimodal foundation model that fuses 3D low-dose chest CT with clinical data to answer 17 lung cancer screening questions.

    Imaging
    71Openness
  • MedPLIB

    1343910
    Baidu +3 othersDecember 12, 2024histologymedical_image_groundingmixture_of_experts+8

    Biomedical multimodal LLM that answers questions about medical images and returns pixel-level segmentation masks, using a mixture-of-experts design.

    ImagingLanguage model
    80Openness