All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 111 of 11 filtered models

  • TRIOPS

    UC Santa CruzJuly 4, 2026cnncross_attentionimmune_repertoire_analysis+4

    T-cell receptor-MHC restriction prediction from amino acid sequence, mapping TCRs to their restricting HLA allele at 0.97 held-out AUC.

    Protein
    22Openness
  • GermRL

    14
    Johns Hopkins UniversityJune 11, 2026antibodyantibody_designde_novo_design+6

    Reinforcement learning framework that fine-tunes the ProGen2-OAS antibody language model with GRPO to cut germline bias in generated sequences.

    Protein
    65Openness
  • FlashABB

    19
    Oxford Protein Informatics Group (OPIG)June 4, 2026antibodydevelopability_predictionfoundation_model+4

    Pretrained antibody structure predictor that outputs full paired heavy/light 3D structures faster than protein language models generate embeddings.

    Protein
    54Openness
  • EVA

    89
    Scienta LabFebruary 10, 2026embeddingsfoundation_modelgene_expression+9

    Cross-species multimodal foundation model of immunology and inflammation, harmonizing transcriptomics and histology into patient-level embeddings.

    Single-cellRNAPathology
    27Openness
  • DecoderTCR

    8
    Biohub +1 otherFebruary 4, 2026contrastive_learningfoundation_modelimmune_repertoire_analysis+5

    Masked language model for T-cell receptor and peptide-MHC binding prediction, with compositional pretraining and non-autoregressive decoding.

    Protein
    56Openness
  • scLDM.CD4

    9198
    Chan Zuckerberg InitiativeNovember 4, 2025autoencodercell_biologydiffusion+7

    Single-cell latent diffusion model fine-tuned on 14.5 million CD4+ T cells to simulate transcriptomic effects of single-gene perturbations.

    Single-cell
    75Openness
  • Albert Einstein College of MedicineOctober 30, 2025antibodyantibody_designembeddings+5

    Structure-based conformational B-cell epitope predictor that scores local antigen surface patches with ESM-2 embeddings and an ensemble MLP.

    Protein
    12Openness
  • p-IgGen

    13297
    Oxford Protein Informatics Group (OPIG) +1 otherNovember 9, 2024antibodyde_novo_designfoundation_model+5

    Antibody language model that generates paired heavy and light variable domains, with a developability-conditioned variant for manufacturable designs.

    Protein
    68Openness
  • IgLM

    192130
    GrayLabNovember 15, 2023antibodyfoundation_modelimmunology+1

    Generative language model trained on 558 million antibody sequences for infilling-based design of CDR loops and full-length immunoglobulin sequences.

    Protein
    12Openness
  • AntiBERTa

    65160
    AlchemabMay 18, 2022antibodyfoundation_modelimmunology+1

    BERT-based antibody language model pretrained on 57M B cell receptor sequences for paratope prediction and convergent antibody discovery.

    Protein
    60Openness
  • AbLang

    167217
    Oxford Protein Informatics Group (OPIG)January 1, 2022antibodyfoundation_modelimmunology+2

    Antibody-specific language model trained on the OAS database for restoring missing residues and generating high-quality sequence representations.

    Protein
    62Openness