All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 124 of 61 filtered models

  • DaX

    1
    DAMO AcademyJune 5, 2026biomarker_predictioncancer_subtypingdino+5

    Pathology vision foundation model adapting DINOv3-style self-supervised learning to whole-slide histopathology across continuous magnifications and scales.

    Pathology
    11Openness
  • SQUALL

    Peking UniversityJune 3, 2026biomarker_discoveryfoundation_modelgene_expression+6

    Multimodal foundation model pretrained on 1.76 billion paired histology-spatial transcriptomics spots, linking whole-slide images to spatial molecular programs.

    PathologySpatial omics
    6Openness
  • TARIO-2

    NoetikJune 1, 2026foundation_modelgene_expressionhistology+4

    Multimodal tumor foundation model trained on paired H&E histology and spatial transcriptomics to infer whole-transcriptome and tumor-microenvironment signal from routine H&E alone.

    PathologySpatial omics
    6Openness
  • Nanjing University +2 othersMay 30, 2026foundation_modelgene_expression_predictionhistology+7

    A tri-modal foundation model unifying histology images, spatial transcriptomics, and biological language for zero-shot spatial biology and pathology reasoning.

    PathologySpatial omics
    65Openness
  • STMDiT

    ETH Zurich +1 otherMay 29, 2026diffusion_transformergenerativehistology+5

    A diffusion transformer that synthesizes H&E histopathology image patches conditioned jointly on spatial transcriptomics gene expression and morphological embeddings.

    PathologySpatial omics
    44Openness
  • BRIDGE

    The University of Hong KongMay 8, 2026contrastive_learningfoundation_modelgene_expression_prediction+8

    A multi-organ foundation model aligning histology image features with spatial-transcriptomics gene expression across 13 organs for zero-shot virtual ST and survival prediction.

    PathologySpatial omics
    31Openness
  • Phoenix

    Helmholtz Munich +1 otherApril 29, 2026cell_type_annotationflow_matchingfoundation_model+6

    Latent flow-matching foundation model that predicts pan-cancer spatially-resolved single-cell gene expression directly from routine H&E histology slides.

    PathologySpatial omics
    8Openness
  • H2O

    Tencent AI for Life Science Lab +2 othersApril 24, 2026contrastive_learningfoundation_modelgene_expression+6

    A foundation model that predicts spatial transcriptomics and proteomics directly from routine H&E whole-slide images using a vision transformer aligned with a language model.

    PathologySpatial omics
    7Openness
  • SMILE

    Johns Hopkins UniversityApril 17, 2026diffusiongenerativehistology+3

    A Schrödinger-bridge diffusion model for virtual multiplex staining that translates standard H&E histology into multiplex immunohistochemistry images.

    Pathology
    8Openness
  • MuPD

    Stanford UniversityApril 4, 2026data_augmentationdiffusion_transformerfoundation_model+7

    A generative diffusion-transformer foundation model that embeds H&E histology, RNA profiles, and clinical text in a shared latent space for zero-shot cross-modal synthesis.

    PathologySpatial omics
    15Openness
  • STORM

    1
    Stanford UniversityApril 4, 2026clinical_outcome_predictionfoundation_modelgene_expression_prediction+7

    A hierarchical multimodal foundation model integrating spatial transcriptomics and H&E histology for biological discovery and platform-agnostic clinical prediction.

    Spatial omicsPathology
    17Openness
  • genbio.aiMarch 20, 2026foundation_modelhistologyrepresentation_learning+3

    1.1B-parameter histopathology foundation model trained on public data with a JEDI (JEPA+DINO) dual-stage strategy, reaching state-of-the-art on THUNDER, HEST, and PathoROB.

    Pathology
    21Openness
  • University of Texas at Arlington +1 otherMarch 13, 2026gangenerativehistology+6

    Foundation-model-guided virtual staining that generates four IHC markers (HER2, Ki67, ER, PR) from H&E using a single SPADE-UNet conditioned on a frozen UNI encoder.

    Pathology
    17Openness
  • MIT +1 otherMarch 11, 2026cell_type_annotationfoundation_modelgene_expression_prediction+7

    A self-supervised, cell-centric pretraining strategy that distills morphology and microenvironment views of each cell into a unified embedding for virtual spatial omics from microscopy.

    Spatial omicsImagingPathology
    15Openness
  • EVA

    105
    Scienta LabFebruary 10, 2026embeddingsfoundation_modelgene_expression+9

    Cross-species, multimodal foundation model of immunology and inflammation that harmonizes transcriptomics and histology into unified patient-level representations.

    Single-cellRNAPathology
    27Openness
  • MoLF

    National Center for Tumor Diseases DresdenFebruary 2, 2026flow_matchinggene_expressiongenerative+5

    A pan-cancer generative model that predicts spatial gene expression from H&E histology using conditional flow matching with a mixture-of-experts velocity field.

    PathologySpatial omics
    9Openness
  • COSMIC

    EPFLJanuary 24, 2026autoencodercell_biologycell_type_annotation+7

    Bidirectional generative framework linking single-cell nuclear morphology and gene expression, built on a morphology foundation model trained on 21M+ segmented nuclei.

    ImagingSingle-cellSpatial omics
    4Openness
  • FOCUS

    University of CambridgeDecember 23, 2025diffusionfoundation_modelgene_expression_imputation+8

    Generative foundation model that enhances spatial transcriptomics by conditioning on H&E histology, scRNA-seq references, and spatial co-expression priors.

    Spatial omicsPathologySingle-cell
    4Openness
  • PLUTO-4

    2
    PathAINovember 4, 2025digital_pathologyfoundation_modelhistology+6

    Frontier-scale digital pathology foundation models from PathAI, spanning a compact 22M-parameter variant and a 1.1B-parameter flagship trained on 551K whole-slide images.

    Pathology
    19Openness
  • GPFM

    12637
    Hong Kong University of Science and Technology +3 othersNovember 1, 2025cancer_diagnosisfeature_extractionfoundation_model+8

    A generalizable computational-pathology foundation model trained on ~190M histopathology patches via unified knowledge distillation from UNI, Phikon, and CONCH.

    Pathology
    84Openness
  • MIMO

    1223
    Peking University +1 otherOctober 11, 2025histologyinstruction_tuningmultimodal+6

    A medical vision-language model that accepts visual-referring multimodal input and produces pixel-grounded multimodal output, jointly answering and segmenting medical images.

    ImagingLanguage model
    11Openness
  • Chongqing University of TechnologyJuly 1, 2025histologyinstruction_tuningmedical_image_understanding+5

    A 4.2B-parameter lightweight biomedical vision-language assistant built on Phi-2 that outperforms larger LLaVA-Med models on medical visual question answering.

    ImagingLanguage model
    15Openness
  • Shanghai AI Laboratory +2 othersJune 20, 2025chain_of_thoughtclinical_reasoninghistology+6

    Medical multimodal LLM (2B and 8B) trained for generalizable, step-by-step clinical reasoning via Mentor-Intern Collaborative Search.

    PathologyImaging
    67Openness
  • Lingshu

    31543.8K
    DAMO Academy +1 otherJune 8, 2025clinical_reasoningfoundation_modelhistology+7

    A generalist medical multimodal LLM built on Qwen2.5-VL for unified medical image understanding, visual question answering, report generation, and clinical reasoning across 12+ imaging modalities.

    ImagingLanguage model
    70Openness