All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 15 of 5 filtered models

  • scLong

    2210
    Chinese Academy of SciencesApril 1, 2026batch_integrationcell_type_annotationfoundation_model+5

    Billion-parameter single-cell foundation model with self-attention over 28,000 human genes, adding Gene Ontology priors via a graph neural network.

    Single-cell
    29Openness
  • GO-GPT

    122939
    Bowang LabMarch 20, 2026gene_ontologygenerativego_term_annotation+3

    Protein function prediction model that autoregressively generates Gene Ontology terms from amino acid sequence instead of classifying fixed labels.

    Protein
    55Openness
  • DeepGO

    61106
    Bio-Ontology Research GroupJanuary 1, 2024gene_ontologyprotein_function_prediction

    Protein function prediction models that assign Gene Ontology terms using language model embeddings and neuro-symbolic reasoning over GO axioms.

    Protein
    63Openness
  • OntoProtein

    152140210
    Zhejiang UniversityJanuary 28, 2022foundation_modelgene_ontologyknowledge_graph+1

    Protein language model that fuses Gene Ontology knowledge graphs with masked language modeling, improving protein function and interaction prediction.

    Protein
    63Openness
  • ProteinBERT

    579981
    Hebrew University of JerusalemJanuary 13, 2022foundation_modelgene_ontologylanguage_model+1

    Protein language model pretrained on UniRef90 with masked language modeling and Gene Ontology annotation prediction, at 16 million parameters.

    Protein
    86Openness