All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 1–24 of 97 filtered models
DrugGen 2
6—834Generative language model that designs drug-like SMILES conditioned on disease ontology and a target protein sequence for de novo drug discovery.
Small moleculeProtein51OpennessPep2Mol
———Diffusion model for 3D small-molecule design against protein-protein interaction sites, guided by the natural binding peptide or protein partner.
Small moleculeProtein10OpennessMolexar
7—17Multimodal molecular generation model for drug design, conditioned on properties, pharmacophores, protein sequences, or protein binding pockets.
Small moleculeProtein82OpennessSesame
———Diffusion model that generates 3D small molecules conditioned on protein pockets and partial fragments encoded as continuous spatial density maps.
Small moleculeProtein15OpennessJEDEL
———Zero-shot generative framework that turns 3D pharmacophores into synthesis-ready DNA-encoded libraries of purchasable building blocks.
Small molecule23OpennessTCRDiff
7——Conditional denoising diffusion model that designs antigen-specific TCR CDR3β sequences conditioned on peptide-MHC targets and germline V-genes.
Protein75OpennessMoE-Bind
2——Protein binder generator producing receptor-conditioned binders from sequence alone, using a sparse Mixture-of-Experts transformer with no 3D input.
Protein54OpennessRDiffusion
———Diffusion-based generative RNA model for de novo sequence design, conditioned on function, RNA family, structure, or binding proteins.
RNA5OpennessGermRL
1—4Reinforcement learning framework that fine-tunes the ProGen2-OAS antibody language model with GRPO to cut germline bias in generated sequences.
Protein65OpennessDiffusion-based backbone generation and sequence design method for programmable asymmetric transmembrane beta-barrel nanopores.
Protein17OpennessPepForge
4——Generative model for chemically modified and macrocyclic peptides that builds molecules in HELM notation, supporting de novo design and infilling.
ProteinSmall molecule94OpennessmRNAutilus
—1—Masked discrete-diffusion model over millions of full-length mRNAs, steered by Monte Carlo tree search for joint codon optimization and UTR design.
RNA7OpennessDanioDecima
———Zebrafish sequence-to-function model predicting cell-type-specific gene expression from DNA sequence across embryonic development.
DNA & GeneSingle-cell22OpennessTD3B
—2—Sequence-based discrete-diffusion framework that designs peptide binders with specified agonist or antagonist behavior against GPCR targets.
Protein10OpennessProtLiD
6——370M-parameter ligand-conditioned discrete diffusion model that co-designs protein sequence and structure under explicit small-molecule constraints.
Protein5OpennessMuseDrift
———Conditional discrete diffusion model for protein variant generation, with a calibrated identity dial controlling drift from a wild-type sequence.
Protein12OpennessPTM-dCN
———Latent diffusion model for PTM-aware protein sequence design, using ControlNet-style conditioning to steer generation toward chosen PTM sites.
Protein10OpennessMochiDiff
———Discrete diffusion model for conditional antibody sequence design with germline-absorbing noising that focuses learning on somatic variation.
Protein8OpennessA-CODE
———All-atom protein co-design model that generates sequence and structure together in one unified diffusion process, aimed at hard binder design.
Protein8Opennesssm_protgpt2
——7Three fixed ProtGPT2 fine-tunes specialized for metalloprotein generation, trained on ProteinMPNN-derived synthetic sequences.
Protein38OpennessProteo-R1
6453.2KReasoning-guided foundation model for de novo antibody CDR design, pairing a multimodal LLM understanding expert with a Boltz-1 diffusion expert.
Protein53OpennessCodeFP
———Co-generative protein language model decoding sequence and structure tokens together from GO functional annotations for de novo protein design.
Protein17OpennessCoMole
———Motif-aware graph diffusion model for controllable molecular generation that adapts to unseen properties by learning a lightweight task embedding.
Small molecule23Openness