All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 124 of 45 filtered models

  • IgGM2

    Tencent AI for Life Science Lab +3 othersJuly 9, 2026antibodydiffusionfoundation_model+4

    All-atom foundation model for immune-receptor design that predicts structures and co-designs CDR sequences for antibodies, nanobodies, and TCRs.

    Protein
    32Openness
  • OpenDDE

    368
    AurekaJuly 4, 2026antibodyco_foldingdiffusion+2

    Open-source all-atom co-folding foundation model for protein-ligand, protein-protein, and antibody-antigen complex prediction in drug discovery.

    ProteinSmall molecule
    75Openness
  • BoltzProt-1

    4.1K
    BoltzJune 16, 2026antibodybinder_designfoundation_model+5

    De novo protein binder and nanobody design pipeline that ranks candidates by a protein-protein interaction model rather than structural confidence.

    Protein
    11Openness
  • TCRDiff

    7
    Monash UniversityJune 14, 2026antibodyde_novo_designdiffusion+5

    Conditional denoising diffusion model that designs antigen-specific TCR CDR3β sequences conditioned on peptide-MHC targets and germline V-genes.

    Protein
    75Openness
  • GermRL

    14
    Johns Hopkins UniversityJune 11, 2026antibodyantibody_designde_novo_design+6

    Reinforcement learning framework that fine-tunes the ProGen2-OAS antibody language model with GRPO to cut germline bias in generated sequences.

    Protein
    65Openness
  • Promera

    83
    MIT +1 otherJune 10, 2026antibodybinder_designdiffusion+5

    Unified all-atom generative model for biomolecular structure prediction, binder filtering, and controllable protein and nanobody design.

    Protein
    61Openness
  • Chai-3

    Chai DiscoveryJune 4, 2026antibodyantibody_designdrug_discovery+4

    Generative foundation model for antibody and multispecific design, doubling its predecessor's experimental success rate on therapeutic targets.

    Protein
    4Openness
  • FlashABB

    19
    Oxford Protein Informatics Group (OPIG)June 4, 2026antibodydevelopability_predictionfoundation_model+4

    Pretrained antibody structure predictor that outputs full paired heavy/light 3D structures faster than protein language models generate embeddings.

    Protein
    54Openness
  • ESMFold2

    2.9K10320.4K
    BiohubMay 27, 2026antibodybinder_designbiomolecular_complex+5

    Structure-prediction and design engine that turns ESMC sequence representations into all-atom 3D structures of proteins and biomolecular complexes.

    Protein
    61Openness
  • MochiDiff

    University of Washington +1 otherMay 7, 2026antibodyantibody_designde_novo_design+6

    Discrete diffusion model for conditional antibody sequence design with germline-absorbing noising that focuses learning on somatic variation.

    Protein
    8Openness
  • Proteo-R1

    6453.2K
    Stanford University +3 othersMay 1, 2026antibodyde_novo_designdiffusion+5

    Reasoning-guided foundation model for de novo antibody CDR design, pairing a multimodal LLM understanding expert with a Boltz-1 diffusion expert.

    Protein
    53Openness
  • AF2Dock

    151
    Johns Hopkins University +1 otherApril 24, 2026antibodyflow_matchinggenerative+5

    Protein-protein docking model adapting AlphaFold-Multimer with a docking module and flow-matching training to assemble subunits without MSAs.

    Protein
    77Openness
  • Germinal

    27234
    Stanford University +1 otherApril 15, 2026antibodyde_novo_designgenerative+3

    Generative pipeline for epitope-targeted de novo antibody (nanobody) CDR design that yields nanomolar binders from only dozens of designs per antigen.

    Protein
    37Openness
  • ByteDance AI LabApril 8, 2026antibodyantibody_designde_novo_design+6

    464M-parameter structure prediction and design model that improves antibody-antigen complex accuracy over Protenix-v1 and adds generative VHH design.

    Protein
    81Openness
  • SpeciefAI

    University of EdinburghMarch 16, 2026antibodyantibody_designgenerative+5

    Transformer that generates multi-species antibody and nanobody framework regions at the mRNA level, conditioned on input CDRs, across six species.

    ProteinRNA
    46Openness
  • AnewOmni

    842
    Tsinghua University +1 otherMarch 15, 2026antibodyde_novo_designdiffusion+6

    All-atom generative foundation model that designs small molecules, peptides, and nanobodies against a target binding site from a single checkpoint.

    ProteinSmall molecule
    63Openness
  • EvoFlows

    2
    CradleMarch 12, 2026antibodyflow_matchinggenerative+5

    Edit-based flow-matching model that proposes protein variants by learning insertions, deletions, and substitutions on a template sequence.

    Protein
    21Openness
  • National University of SingaporeMarch 10, 2026antibodybinding_affinity_predictionfoundation_model+6

    Paired-sequence protein language model that jointly encodes two interacting chains to predict interactions, binding affinity, and interface contacts.

    Protein
    27Openness
  • CALM-1.0

    3
    ETH ZurichFebruary 26, 2026antibodyantibody_designantigen+6

    Contrastive antibody language model predicting antibody-antigen binding specificity from sequence with a dual-encoder, cross-attentive architecture.

    Protein
    10Openness
  • PPIFlow

    4
    Changping LaboratoryJanuary 22, 2026antibodyde_novo_designflow_matching+5

    Flow-matching generative model for de novo protein binder backbone design, built on a Pairformer architecture with in silico interface maturation.

    Protein
    4Openness
  • CMAP

    Amazon Web ServicesJanuary 7, 2026antibodyantibody_developabilityin_context_learning+4

    Antibody developability predictor pairing text and protein language models, using in-context learning to fit new assays without retraining.

    ProteinLanguage model
    4Openness
  • BoltzGen

    1K80
    MITNovember 24, 2025antibodybinder_designde_novo_design+5

    All-atom generative model for de novo protein and peptide binder design against diverse biomolecular targets, wet-lab validated across 26 targets.

    ProteinSmall molecule
    78Openness
  • ConformAb

    1
    GenentechNovember 13, 2025antibodyantibody_designdiffusion+5

    Guided discrete diffusion model for antibody lead optimization, conditioning sequence design on the seed binder's CDR canonical backbone conformation.

    Protein
    18Openness
  • H3BERTa

    1201
    University of BernNovember 3, 2025antibodyantibody_repertoire_analysisbert+8

    Antibody language model pretrained only on CDR-H3 loops, giving embeddings for immune repertoire analysis and antibody sequence classification.

    ProteinLanguage model
    83Openness