All Competitors

Phylogeny-informed transformer that detects episodic diversifying selection in codon alignments, amortizing maximum-likelihood dN/dS tests.

De novo small-molecule generation conditioned on disease-reversal gene expression, with a contrastive transcriptome encoder steering a MolT5 decoder.

Plant genomic foundation models on a bidirectional Mamba-2 backbone, 318M to 3.2B parameters, pretrained on 320 species with context out to 128 kbp.

Drug repurposing model that propagates transcriptional signatures through a pretrained graph autoencoder of the human protein interaction network.

Genomic variant effect prediction from a bidirectional absorbing-diffusion model over human DNA, pretrained with entropy-guided span masking.

Graph-grounded language model for antimicrobial resistance reasoning that judges gene-drug links from serialized multi-hop knowledge-graph paths.

Genomic language model for tomato pangenomes that conditions DNA tokens on graph node attributes and local adjacency as well as masked modelling.

Protein language model scoring whether a kinase missense variant alters catalytic activity, fine-tuned from ProtBert on 2,553 curated alterations.

Unsupervised gene finder that annotates any eukaryotic genome from a raw FASTA file, using a differentiable hidden Markov layer inside the network.

Biomolecular complex structure prediction without multiple sequence alignment, for protein-protein, protein-ligand and protein-nucleic acid binding.

Longitudinal multimodal patient foundation model for oncology, fusing clinical records, DNA, RNA, and H&E pathology into one patient-state embedding.

Codon language model for mRNA prediction and coding sequence design, steering synonymous codon choice with a swappable host usage prior at inference.

State-space estimator that infers fine-scale recombination maps from population genotypes, reusing one frozen checkpoint across species.

Genomic foundation model that pairs 650 kb of gene-centered DNA with transcription factor activity to predict expression in unseen cell types.

Gene regulatory network inference from scRNA-seq that returns directed TF-to-target edges in one forward pass, with no per-dataset refitting.

Variant effect and disease phosphosite prediction that fuses frozen ESM-2 embeddings with normal-mode protein dynamics over AlphaFold residue graphs.

Self-supervised transformer fusing Enformer DNA embeddings with ATAC-seq accessibility into reusable 256-dimensional genomic window embeddings.

Designs RNA and DNA aptamers against protein targets by backpropagating binding and anti-binding objectives through a frozen all-atom predictor.

Pan-cancer clinico-genomic model for treatment response and survival prediction, transferring zero-shot to unseen hospitals and cancer types.

Sparse mixture-of-experts DNA encoder pretrained on multi-species genomes at 235M to 1B parameters, reading 64 kb of context and 256 kb at 235M.

Transformer U-Net pretrained on 6 trillion tokens of multi-species DNA, predicting expression and epigenomic tracks across 1 Mb of context.

Biomolecular sequence-structure co-design that plans over frozen folding and inverse-folding models with Monte Carlo tree search, training nothing.

Infers gene-centered chromatin interactions from bulk RNA-seq alone, mapping 3D genome changes across 12,347 tumor and normal transcriptomes.